Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   OJ967_RS17830 Genome accession   NZ_CP110132
Coordinates   3720833..3721918 (-) Length   361 a.a.
NCBI ID   WP_371748447.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain Q2H1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3715833..3726918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OJ967_RS17790 (OJ967_17790) - 3716700..3717497 (+) 798 WP_048688306.1 YqhG family protein -
  OJ967_RS17795 (OJ967_17795) - 3717543..3717728 (-) 186 WP_057278811.1 YqzE family protein -
  OJ967_RS17800 (OJ967_17800) comGG 3717844..3718230 (-) 387 WP_053535692.1 competence type IV pilus minor pilin ComGG -
  OJ967_RS17805 (OJ967_17805) comGF 3718223..3718702 (-) 480 WP_262869649.1 competence type IV pilus minor pilin ComGF -
  OJ967_RS17810 (OJ967_17810) - 3718650..3718988 (-) 339 WP_106026884.1 hypothetical protein -
  OJ967_RS17815 (OJ967_17815) comGD 3718975..3719418 (-) 444 WP_034308382.1 competence type IV pilus minor pilin ComGD -
  OJ967_RS17820 (OJ967_17820) comGC 3719426..3719737 (-) 312 WP_306804695.1 competence type IV pilus major pilin ComGC Machinery gene
  OJ967_RS17825 (OJ967_17825) comGB 3719815..3720849 (-) 1035 WP_264639027.1 competence type IV pilus assembly protein ComGB -
  OJ967_RS17830 (OJ967_17830) comGA 3720833..3721918 (-) 1086 WP_371748447.1 competence type IV pilus ATPase ComGA Machinery gene
  OJ967_RS17835 (OJ967_17835) - 3722013..3722393 (-) 381 WP_095678573.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  OJ967_RS17840 (OJ967_17840) - 3722609..3723310 (+) 702 WP_034308391.1 metalloregulator ArsR/SmtB family transcription factor -
  OJ967_RS17845 (OJ967_17845) - 3723396..3723638 (+) 243 WP_034308393.1 DUF2626 domain-containing protein -
  OJ967_RS17850 (OJ967_17850) - 3723690..3724811 (-) 1122 WP_264639028.1 class I SAM-dependent methyltransferase -
  OJ967_RS17855 (OJ967_17855) - 3725077..3725703 (-) 627 WP_264639029.1 MBL fold metallo-hydrolase -
  OJ967_RS17860 (OJ967_17860) - 3725937..3726110 (+) 174 WP_034308396.1 DUF2759 domain-containing protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 40112.77 Da        Isoelectric Point: 8.4751

>NTDB_id=752592 OJ967_RS17830 WP_371748447.1 3720833..3721918(-) (comGA) [Peribacillus frigoritolerans strain Q2H1]
MNELISIEKTAEKILTRAIVESASDIHIFFRGEGPHIQFRIDNKLVPQETLSFFEAERLIAHLKFLASMDIGEKRRPQSG
AITINLANQVVGLRLSTLPTAHLESLVIRLIPQQNILPLEQLSLFPNTVQKLIALLKHSHGMLIFTGPTGSGKTTTLYSL
LHHAHEMINRNIITLEDPIENVSEKVLQVQINEKAGITYSVGLKAVLRHDPDVIMVGEVRDAETAKIAVRAALTGHLILT
TMHTRDAQGAISRLLEFGVSLLEVEQTLIGVTAQRLVELRCLPCKGDCALACKMTARNKRASVYELLYGKSLAEVLRIMG
DEKGKATVSYRQLKDEIGKAVAMGYVGSQEYERLVYHETKK

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=752592 OJ967_RS17830 WP_371748447.1 3720833..3721918(-) (comGA) [Peribacillus frigoritolerans strain Q2H1]
ATGAATGAATTGATATCGATTGAAAAGACCGCAGAAAAAATACTAACCCGTGCCATCGTGGAATCGGCATCGGATATCCA
CATTTTTTTTCGCGGAGAGGGGCCTCACATCCAATTCAGAATAGACAATAAGCTTGTTCCCCAGGAAACATTATCATTCT
TTGAAGCTGAAAGGCTGATCGCTCATTTGAAGTTCCTTGCCTCGATGGATATAGGGGAGAAAAGGAGGCCCCAGAGTGGT
GCCATCACCATCAATTTGGCTAACCAGGTGGTCGGACTCCGCCTTTCCACTTTACCCACTGCCCATCTCGAAAGTTTGGT
CATCCGCTTAATACCCCAACAGAATATCCTTCCTCTAGAACAGTTATCCTTATTTCCAAACACCGTTCAAAAATTGATTG
CACTCCTGAAGCATTCCCATGGCATGCTCATATTTACCGGCCCGACCGGCAGTGGGAAAACCACGACACTATATTCCCTG
CTTCACCACGCCCATGAGATGATCAATCGAAATATCATTACACTTGAAGATCCCATTGAAAATGTATCCGAAAAGGTATT
GCAAGTCCAAATCAATGAAAAGGCGGGCATTACGTATTCAGTCGGCCTAAAAGCTGTTCTGAGGCATGACCCGGACGTGA
TCATGGTTGGGGAAGTCCGGGATGCAGAAACTGCCAAAATCGCAGTCCGTGCCGCATTAACCGGTCATTTGATACTAACG
ACCATGCATACGAGGGACGCCCAGGGCGCCATCTCCAGATTACTGGAATTTGGTGTCAGCTTACTTGAGGTTGAACAGAC
TTTGATTGGCGTGACAGCGCAGCGGCTGGTTGAATTGCGATGTCTTCCGTGTAAAGGGGACTGTGCTTTAGCTTGCAAAA
TGACTGCAAGGAATAAAAGGGCAAGTGTATATGAATTGCTATATGGAAAAAGTCTGGCTGAAGTTCTCCGGATAATGGGA
GATGAAAAAGGAAAGGCAACGGTCAGCTACCGCCAATTAAAGGATGAAATCGGAAAAGCGGTTGCGATGGGCTATGTGGG
ATCTCAGGAATATGAACGGCTGGTCTACCATGAAACCAAAAAGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(13-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

56.056

98.338

0.551
  pilB Haemophilus influenzae 86-028NP

38.218

96.399

0.368