Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   SFSGTM_RS15210 Genome accession   NZ_AP021881
Coordinates   3087056..3088480 (-) Length   474 a.a.
NCBI ID   WP_162085897.1    Uniprot ID   -
Organism   Sulfuriferula nivalis strain SGTM     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3082056..3093480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SFSGTM_RS15170 (SFSGTM_29330) - 3082310..3082951 (-) 642 WP_162085892.1 LON peptidase substrate-binding domain-containing protein -
  SFSGTM_RS15175 (SFSGTM_29340) - 3082948..3083565 (-) 618 WP_162085893.1 flavin prenyltransferase UbiX -
  SFSGTM_RS15180 (SFSGTM_29350) - 3083546..3084073 (-) 528 WP_162085894.1 Gx transporter family protein -
  SFSGTM_RS15185 (SFSGTM_29360) - 3084054..3084434 (-) 381 WP_232525997.1 NusG domain II-containing protein -
  SFSGTM_RS15190 (SFSGTM_29370) rapZ 3084435..3085268 (-) 834 WP_162086370.1 RNase adapter RapZ -
  SFSGTM_RS15195 (SFSGTM_29380) hprK 3085289..3086233 (-) 945 WP_174237427.1 HPr(Ser) kinase/phosphatase -
  SFSGTM_RS15200 (SFSGTM_29390) ptsN 3086230..3086685 (-) 456 WP_162085895.1 PTS IIA-like nitrogen regulatory protein PtsN -
  SFSGTM_RS15205 (SFSGTM_29400) raiA 3086698..3087033 (-) 336 WP_162085896.1 ribosome-associated translation inhibitor RaiA -
  SFSGTM_RS15210 (SFSGTM_29410) rpoN/rpoN1 3087056..3088480 (-) 1425 WP_162085897.1 RNA polymerase factor sigma-54 Machinery gene
  SFSGTM_RS15215 (SFSGTM_29420) lptB 3088483..3089205 (-) 723 WP_162085898.1 LPS export ABC transporter ATP-binding protein -
  SFSGTM_RS15220 (SFSGTM_29430) lptA 3089202..3089792 (-) 591 WP_162085899.1 lipopolysaccharide transport periplasmic protein LptA -
  SFSGTM_RS15225 (SFSGTM_29440) lptC 3089776..3090348 (-) 573 WP_162085900.1 LPS export ABC transporter periplasmic protein LptC -
  SFSGTM_RS15230 (SFSGTM_29450) - 3090345..3090869 (-) 525 WP_162085901.1 HAD family hydrolase -
  SFSGTM_RS15235 (SFSGTM_29460) - 3090870..3091874 (-) 1005 WP_198420570.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 53243.62 Da        Isoelectric Point: 4.8314

>NTDB_id=75252 SFSGTM_RS15210 WP_162085897.1 3087056..3088480(-) (rpoN/rpoN1) [Sulfuriferula nivalis strain SGTM]
MKQGLQLKFSQNLTLTPQLQQSIRLLQLSTLELNQELELMVQENPLLERVDSIDDGTPHTAEFETTSATQESASEQPVEA
APRELNDLDWDETPNYGSGDDLDEDFEPQATAQDEPPLRDHLLWQLNLTQLSERDKRLVALLIDDLNEAGYLTQTLDEIL
AMLPEELDVDLEDLQIALKQLQNLEPTGVGARDLAECLLLQLRALPVDTPHLDLAQKIATHELAALGAHDYAGLKRKLHC
DDVALGAAQSLIQQLNPRPGEAFGTSDTRYIIPDVIVKKVKGRWVASLNSEAMPKLRVNQMYADILSRNRDANHQHLSGQ
LQEAKWLIKNIMQRFDTILRVTQCIVDRQKHFFEHGEVAMRPLVLREIADIVELHESTVSRVTTQKFMMTPRGIFELKYF
FGSHVSTDAGGACSATAIRALIKQLISAENTKKPLSDGKIAEMLVQQGINVARRTIAKYRESLQIPPANQRKAL

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=75252 SFSGTM_RS15210 WP_162085897.1 3087056..3088480(-) (rpoN/rpoN1) [Sulfuriferula nivalis strain SGTM]
ATGAAACAAGGTTTACAACTTAAATTCTCACAGAATCTGACGCTGACGCCGCAGCTGCAGCAGTCTATACGCTTGTTACA
GCTGTCGACTCTGGAGCTTAATCAAGAGCTGGAGCTGATGGTGCAGGAGAATCCACTGCTGGAGCGAGTGGACAGTATTG
ATGATGGTACGCCTCATACGGCGGAGTTTGAGACCACATCAGCAACGCAAGAAAGCGCAAGTGAACAACCTGTTGAAGCG
GCGCCACGCGAACTCAATGATTTAGACTGGGATGAAACGCCAAACTATGGTTCGGGTGATGATCTGGATGAGGATTTTGA
ACCACAGGCTACTGCGCAAGATGAGCCGCCGTTGCGTGACCATTTGTTATGGCAGCTAAATCTGACTCAGTTATCCGAAC
GCGATAAGCGTTTGGTGGCGTTGTTGATAGACGATTTGAATGAAGCTGGTTATTTAACCCAGACACTGGATGAAATACTG
GCGATGCTGCCAGAAGAGCTGGACGTAGATTTAGAAGATTTGCAAATTGCACTCAAACAATTGCAGAACCTCGAGCCTAC
CGGTGTGGGTGCGCGCGATTTAGCTGAGTGTCTGCTCTTGCAATTACGTGCTTTGCCAGTCGATACGCCGCATTTAGATT
TGGCGCAAAAAATCGCAACGCATGAATTGGCCGCGTTGGGCGCGCATGATTATGCAGGTCTAAAGCGCAAGCTGCACTGC
GATGATGTGGCATTGGGCGCGGCGCAAAGTCTGATCCAGCAATTGAATCCCCGTCCTGGTGAAGCATTTGGCACGTCGGA
TACGCGTTATATTATCCCTGATGTGATAGTGAAAAAAGTTAAGGGGCGCTGGGTAGCCAGTTTGAATTCCGAAGCGATGC
CCAAGCTGCGTGTTAATCAAATGTATGCTGATATTTTGTCGCGGAACCGGGATGCAAATCATCAGCATCTGTCTGGGCAG
CTGCAAGAGGCTAAGTGGCTGATTAAGAACATTATGCAGCGTTTTGATACCATATTGCGGGTAACGCAGTGTATTGTTGA
CAGGCAAAAGCATTTTTTTGAACATGGTGAAGTTGCCATGCGCCCCTTGGTATTGCGTGAAATTGCTGATATTGTTGAAT
TGCACGAATCGACTGTGTCGCGAGTCACTACGCAGAAATTCATGATGACACCTCGAGGTATCTTTGAATTAAAATACTTT
TTCGGTAGCCATGTGAGCACAGATGCAGGTGGTGCTTGCTCAGCGACGGCAATTCGTGCGTTAATTAAGCAACTGATTAG
CGCGGAAAATACTAAGAAGCCTTTATCCGACGGGAAGATAGCGGAGATGCTCGTTCAACAAGGCATTAATGTCGCACGAC
GGACTATCGCCAAGTATCGGGAATCTTTGCAAATCCCTCCCGCCAACCAGCGCAAAGCGCTATAA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(109-302)

Sigma-54, DNA binding domain (Sigma54_DBD)

(316-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

53.493

100

0.565

Multiple sequence alignment