Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   D3P44_RS03230 Genome accession   NZ_CP110110
Coordinates   692134..693726 (-) Length   530 a.a.
NCBI ID   WP_061336966.1    Uniprot ID   -
Organism   Stutzerimonas balearica strain Z8     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 687134..698726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3P44_RS03215 (D3P44_003215) - 687804..689399 (-) 1596 WP_212542492.1 diguanylate cyclase -
  D3P44_RS03220 (D3P44_003220) - 689592..690644 (+) 1053 WP_041107889.1 DUF2333 family protein -
  D3P44_RS03225 (D3P44_003225) pilR 690689..692026 (-) 1338 WP_200293709.1 sigma-54-dependent transcriptional regulator Regulator
  D3P44_RS03230 (D3P44_003230) pilS 692134..693726 (-) 1593 WP_061336966.1 sensor histidine kinase Regulator
  D3P44_RS03235 (D3P44_003235) - 693716..693949 (-) 234 WP_043218531.1 PP0621 family protein -
  D3P44_RS03240 (D3P44_003240) - 694030..695022 (-) 993 WP_041107883.1 outer membrane protein assembly factor BamD -
  D3P44_RS03245 (D3P44_003245) rluD 695170..696144 (+) 975 WP_041107881.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  D3P44_RS03250 (D3P44_003250) pgeF 696141..696872 (+) 732 WP_212542493.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58386.27 Da        Isoelectric Point: 7.0847

>NTDB_id=752411 D3P44_RS03230 WP_061336966.1 692134..693726(-) (pilS) [Stutzerimonas balearica strain Z8]
MDTDTLAIAAGQSQRILRLYHLYRLAIGLALVLLISSDLHNDLLQMSNPQLFSYGAWLYLIVNIVVAVLLQNPTQTVQVL
ALALVDVMLLAALFYFAGGTPSGIGNLLIIAVAISNILVRGKVGFLIAAVAATGLIYLTFYLSLSHPAANSQFVQAGALG
TLCFAAAFLVQGLTRRLQASEDLARQRAADVANLEALNTLILQRMRTGILVLDPQQRVLLANQGALQMLEQDSLTGTKLA
EHCPDLIARLGQWQNNPTLRAQGLQISSGGPMLQPSFASLQHGERCNTLVFLEDISQIAQQAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLQESEQLDGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFVSEFRSGLSPR
QCLHLETIGSSLQTRMDPNQLTQVLTNLVQNGLRYSGQVHDTAQVWLRLYRDESSDLPMAEVLDDGPGVAPEQLSNIFEP
FYTTESKGTGLGLYISRELCESNQARLDYQPRPEGGSCFRIVFAHPRKLG

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=752411 D3P44_RS03230 WP_061336966.1 692134..693726(-) (pilS) [Stutzerimonas balearica strain Z8]
GTGGACACTGACACCCTGGCCATCGCCGCTGGCCAGAGCCAGCGCATCCTGCGTCTCTACCACCTCTACCGCCTCGCCAT
CGGGCTGGCGCTGGTGCTGCTGATCAGCAGCGACCTGCACAACGACCTGCTGCAGATGAGCAACCCGCAGCTGTTCAGCT
ACGGCGCCTGGCTCTACCTGATCGTCAACATCGTTGTCGCGGTACTGCTGCAGAACCCCACACAGACGGTACAGGTCCTG
GCGCTGGCCCTGGTCGACGTGATGCTACTGGCCGCCCTGTTCTATTTTGCTGGCGGCACGCCCAGCGGGATCGGCAACCT
GCTGATCATCGCGGTGGCCATCTCGAACATCCTGGTACGCGGCAAGGTCGGCTTTCTGATCGCCGCGGTCGCGGCTACCG
GCCTGATCTACCTGACGTTTTACCTGAGCCTCAGCCACCCGGCCGCCAACAGCCAGTTCGTCCAGGCGGGCGCACTGGGC
ACGCTGTGCTTCGCCGCCGCTTTTCTGGTCCAGGGCCTGACGCGTCGCCTGCAAGCCAGTGAAGACCTGGCCCGTCAGCG
CGCGGCGGACGTCGCGAACCTCGAGGCGCTGAACACGCTCATCCTGCAACGCATGCGCACCGGCATTCTCGTGCTCGACC
CGCAGCAGCGCGTACTGCTGGCCAATCAGGGTGCGCTGCAGATGCTCGAACAGGACAGCCTCACCGGCACGAAGCTGGCC
GAGCATTGCCCGGATCTGATCGCGCGCCTGGGCCAATGGCAGAACAACCCGACCTTGCGCGCCCAGGGACTGCAGATTTC
CAGCGGCGGGCCGATGCTGCAGCCAAGCTTTGCCTCGCTGCAGCATGGCGAGCGATGCAATACGCTGGTGTTTCTCGAAG
ATATCTCGCAGATCGCCCAGCAGGCCCAGCAGCTCAAGCTGGCTTCGCTCGGCCGGCTGACCGCCAGCATCGCCCATGAG
ATCCGCAACCCGCTTGGTGCGATCAGCCATGCCGCCCAGCTGCTGCAGGAATCCGAGCAGCTCGACGGCCCGGATCGCCG
GCTGGCACAGATCATCCAGGATCATTCGAGACGCATGAATCTGGTGATCGAAAACGTCCTGCAGCTGTCGCGCCGACGGC
AGGCGGAACCGCAGCTGCTGGACTTGAAGTACTGGCTGCATCGCTTCGTCAGCGAGTTCCGCAGCGGCCTTTCGCCGCGC
CAGTGCCTGCATCTGGAAACCATCGGCAGCTCGCTGCAGACCCGCATGGACCCCAATCAGCTGACGCAGGTGCTGACCAA
CCTGGTGCAGAACGGCCTGCGCTATAGCGGGCAGGTGCACGACACAGCCCAGGTATGGCTGCGCCTGTACCGCGACGAGT
CCAGCGACCTGCCGATGGCCGAAGTGCTCGACGATGGTCCCGGTGTGGCACCGGAACAGCTGAGCAACATCTTCGAGCCC
TTCTATACCACCGAGAGCAAGGGCACCGGGCTGGGCTTGTACATTTCGCGGGAGCTGTGCGAGAGCAATCAGGCGCGCCT
GGACTATCAGCCCCGTCCGGAAGGTGGCAGCTGCTTCCGCATTGTCTTCGCCCATCCGCGCAAGCTGGGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

64.083

99.811

0.64