Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   OKV75_RS11550 Genome accession   NZ_CP110109
Coordinates   2284904..2285947 (-) Length   347 a.a.
NCBI ID   WP_001013187.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain TG-5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2279904..2290947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKV75_RS11505 - 2280337..2280537 (-) 201 WP_000106083.1 YqzE family protein -
  OKV75_RS11510 aroK 2280576..2281073 (-) 498 WP_098675966.1 shikimate kinase AroK -
  OKV75_RS11515 - 2281189..2281839 (-) 651 WP_000183863.1 2OG-Fe(II) oxygenase -
  OKV75_RS11520 comGG 2282014..2282385 (-) 372 WP_001214888.1 competence type IV pilus minor pilin ComGG -
  OKV75_RS11525 comGF 2282382..2282852 (-) 471 WP_142337779.1 competence type IV pilus minor pilin ComGF -
  OKV75_RS11530 - 2282822..2283124 (-) 303 WP_000829467.1 hypothetical protein -
  OKV75_RS11535 comGD 2283117..2283572 (-) 456 WP_000813141.1 competence type IV pilus minor pilin ComGD -
  OKV75_RS11540 comGC 2283569..2283868 (-) 300 WP_001178687.1 competence type IV pilus major pilin ComGC -
  OKV75_RS11545 comGB 2283880..2284911 (-) 1032 WP_083530659.1 competence type IV pilus assembly protein ComGB -
  OKV75_RS11550 comGA 2284904..2285947 (-) 1044 WP_001013187.1 competence type IV pilus ATPase ComGA Machinery gene
  OKV75_RS11555 - 2286153..2286848 (+) 696 WP_000434107.1 metalloregulator ArsR/SmtB family transcription factor -
  OKV75_RS11560 - 2286975..2287217 (+) 243 WP_000375619.1 DUF2626 domain-containing protein -
  OKV75_RS11565 - 2287324..2288718 (+) 1395 WP_001094344.1 L-cystine transporter -
  OKV75_RS11570 - 2288798..2289190 (-) 393 WP_053563649.1 hypothetical protein -
  OKV75_RS11575 - 2289278..2289493 (-) 216 WP_001008326.1 DUF3912 family protein -
  OKV75_RS11580 - 2289747..2290058 (+) 312 WP_001093240.1 hypothetical protein -
  OKV75_RS11585 - 2290093..2290581 (-) 489 WP_000764263.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39164.52 Da        Isoelectric Point: 8.5432

>NTDB_id=752366 OKV75_RS11550 WP_001013187.1 2284904..2285947(-) (comGA) [Bacillus thuringiensis strain TG-5]
MNGIEIFANTILKEACRVQASDLHIVPRQKDVAVQLRVGKDLMTRHCIEKEFGEKLVSHFKFLASMDIGEKRKPQNGSLY
LQIDGQEVYLRLSTLPTVYQESLVIRLHLQASVQPLSHLSLFPSTAAKLLSFLRYSQGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIITLEDPVEKRSDDVLQIQINEKAGLTYETGLKAILRHDPDIILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDAKGAIIRFMDYGITRQEIEQSLLAVAAQRLVELKCPFCRGKCSTLCKSMRQVRQASIYELLYGYELKQALKEADGEC
VTYKHETLESSIRKGYALGFLEDDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=752366 OKV75_RS11550 WP_001013187.1 2284904..2285947(-) (comGA) [Bacillus thuringiensis strain TG-5]
ATGAATGGGATTGAAATTTTTGCGAATACAATTTTAAAAGAAGCGTGTAGGGTACAAGCGTCAGATTTACATATTGTGCC
CCGGCAGAAGGATGTAGCGGTGCAACTACGTGTAGGAAAAGATTTAATGACGAGACATTGTATTGAAAAGGAGTTTGGAG
AAAAACTTGTCTCACATTTTAAATTTTTAGCATCTATGGACATAGGAGAGAAACGGAAGCCACAGAATGGTTCGTTGTAT
TTGCAAATTGATGGACAAGAAGTGTATTTACGCCTTTCAACACTTCCAACAGTATATCAAGAAAGTCTCGTTATTCGCCT
TCATTTACAAGCATCTGTGCAGCCCTTATCACATCTTTCGTTATTTCCAAGTACGGCAGCAAAACTACTCTCGTTTTTAC
GCTATTCACAGGGGCTACTCGTGTTTACTGGACCGACTGGTTCTGGGAAGACAACGACAATGTATGCATTATTAGAGGTA
ATTAGAAAAAAGAAAACACGTCGCATCATTACACTTGAAGATCCGGTTGAAAAAAGAAGTGACGATGTATTACAAATTCA
AATAAATGAAAAAGCGGGTCTCACATATGAAACAGGATTAAAGGCTATTTTACGTCATGATCCAGATATTATTTTAGTCG
GTGAAATCCGTGATGAAGAAACAGCAAAAATAGCTATAAGAGCAAGTTTGACAGGACATTTAGTCATGACAACGCTGCAT
ACGAATGATGCGAAAGGAGCAATCATTCGTTTCATGGATTATGGTATAACGAGGCAAGAGATTGAACAGTCTTTATTGGC
TGTGGCTGCACAGCGACTTGTCGAATTGAAGTGTCCGTTTTGCAGAGGAAAGTGCTCAACTTTATGTAAATCAATGAGGC
AAGTAAGGCAAGCAAGCATTTATGAGCTGCTATATGGATATGAGTTAAAACAAGCGCTTAAAGAAGCAGATGGAGAATGT
GTTACTTACAAACATGAGACTTTAGAATCGTCAATAAGAAAAGGATATGCTTTAGGTTTTTTAGAAGATGATGTTTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

56.196

100

0.562
  pilB Haemophilus influenzae 86-028NP

39.441

92.795

0.366