Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OH773_RS14350 Genome accession   NZ_CP110080
Coordinates   3079897..3080511 (-) Length   204 a.a.
NCBI ID   WP_183273028.1    Uniprot ID   -
Organism   Buttiauxella sp. WJP83     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3074897..3085511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH773_RS14335 (OH773_14335) helD 3075107..3077161 (-) 2055 WP_270139472.1 DNA helicase IV -
  OH773_RS14340 (OH773_14340) - 3077294..3077740 (+) 447 WP_270139473.1 YccF domain-containing protein -
  OH773_RS14345 (OH773_14345) yccS 3077765..3079900 (+) 2136 WP_270139474.1 YccS family putative transporter -
  OH773_RS14350 (OH773_14350) sxy/tfoX 3079897..3080511 (-) 615 WP_183273028.1 TfoX/Sxy family DNA transformation protein Regulator
  OH773_RS14355 (OH773_14355) sulA 3080822..3081241 (+) 420 Protein_2805 SOS-induced cell division inhibitor SulA -
  OH773_RS14360 (OH773_14360) ompA 3081602..3082672 (+) 1071 WP_183273030.1 porin OmpA -
  OH773_RS14365 (OH773_14365) matP 3082779..3083231 (-) 453 WP_270139475.1 macrodomain Ter protein MatP -
  OH773_RS14370 (OH773_14370) - 3083407..3085161 (+) 1755 WP_270139476.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23348.01 Da        Isoelectric Point: 10.1133

>NTDB_id=752155 OH773_RS14350 WP_183273028.1 3079897..3080511(-) (sxy/tfoX) [Buttiauxella sp. WJP83]
MKKRSYARIHQSKECLSPLGDISYRSLFGGYSLTVENVVFAMVSEGELYLRASEQSEVYFVEKASESLVYQKRGRAIALN
YYHVDEALWSDREKLLQLSTDALYSARREKSRLKAQQRLKDLPNLTHSLEMMLWEVGIADVRTLHAYGAKRSWIKLRHLK
KGLGVRVLLALAGAICGVHEAALPAATRRELVEWGHLYAKRQPR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=752155 OH773_RS14350 WP_183273028.1 3079897..3080511(-) (sxy/tfoX) [Buttiauxella sp. WJP83]
ATGAAGAAGCGGTCTTATGCAAGGATTCATCAATCAAAGGAATGTCTATCTCCGTTAGGCGATATCAGTTATCGCTCGCT
ATTTGGTGGATATAGTTTGACCGTCGAGAATGTGGTGTTTGCCATGGTTTCTGAGGGGGAACTTTATCTCCGGGCAAGTG
AACAATCGGAAGTTTACTTCGTTGAAAAAGCATCAGAGTCCCTGGTTTATCAAAAGCGCGGACGAGCAATCGCGCTCAAT
TATTATCATGTTGACGAAGCACTGTGGTCCGATCGGGAAAAACTATTGCAGCTTTCAACCGATGCTTTGTATAGCGCACG
ACGAGAAAAATCGCGCCTGAAAGCGCAGCAACGGCTCAAAGATTTACCCAATTTAACCCACAGTCTGGAAATGATGTTAT
GGGAAGTGGGAATTGCTGATGTGCGGACACTTCACGCCTATGGCGCAAAACGGTCATGGATAAAATTGAGACATTTGAAG
AAAGGGCTGGGTGTACGAGTATTGTTGGCGTTAGCAGGTGCAATCTGCGGTGTTCATGAAGCGGCACTCCCGGCAGCAAC
GCGCCGGGAGTTAGTCGAGTGGGGGCATCTTTACGCGAAACGGCAGCCTCGTTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.97

99.02

0.525