Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | OLM03_RS04100 | Genome accession | NZ_CP110039 |
| Coordinates | 827970..828497 (+) | Length | 175 a.a. |
| NCBI ID | WP_063855925.1 | Uniprot ID | - |
| Organism | Enterococcus faecalis strain BE47 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 815889..854062 | 827970..828497 | within | 0 |
Gene organization within MGE regions
Location: 815889..854062
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OLM03_RS03995 (OLM03_03995) | eis | 815889..817082 (+) | 1194 | WP_264547525.1 | enhanced intracellular survival protein Eis | - |
| OLM03_RS04005 (OLM03_04005) | - | 817547..818683 (-) | 1137 | WP_264547526.1 | site-specific integrase | - |
| OLM03_RS04010 (OLM03_04010) | - | 818809..819393 (-) | 585 | WP_002401949.1 | DUF4352 domain-containing protein | - |
| OLM03_RS04015 (OLM03_04015) | - | 819475..819897 (-) | 423 | WP_010729101.1 | ImmA/IrrE family metallo-endopeptidase | - |
| OLM03_RS04020 (OLM03_04020) | - | 819915..820235 (-) | 321 | WP_128437535.1 | helix-turn-helix domain-containing protein | - |
| OLM03_RS04025 (OLM03_04025) | - | 820535..821302 (+) | 768 | WP_141426545.1 | phage antirepressor KilAC domain-containing protein | - |
| OLM03_RS04030 (OLM03_04030) | - | 821326..821529 (+) | 204 | WP_002296611.1 | helix-turn-helix domain-containing protein | - |
| OLM03_RS04035 (OLM03_04035) | - | 821545..821874 (+) | 330 | WP_141442174.1 | DUF771 domain-containing protein | - |
| OLM03_RS04040 (OLM03_04040) | - | 821932..822102 (+) | 171 | WP_010784067.1 | hypothetical protein | - |
| OLM03_RS04045 (OLM03_04045) | - | 822266..822679 (-) | 414 | WP_010784066.1 | hypothetical protein | - |
| OLM03_RS04050 (OLM03_04050) | - | 822757..823470 (+) | 714 | WP_264547527.1 | Rha family transcriptional regulator | - |
| OLM03_RS04055 (OLM03_04055) | - | 823481..823666 (+) | 186 | WP_002411350.1 | hypothetical protein | - |
| OLM03_RS04060 (OLM03_04060) | - | 823678..823851 (+) | 174 | WP_002364664.1 | hypothetical protein | - |
| OLM03_RS04065 (OLM03_04065) | - | 824051..824173 (+) | 123 | WP_002399179.1 | hypothetical protein | - |
| OLM03_RS04070 (OLM03_04070) | - | 824157..824636 (+) | 480 | WP_002381628.1 | siphovirus Gp157 family protein | - |
| OLM03_RS04075 (OLM03_04075) | - | 824648..825664 (+) | 1017 | WP_002381629.1 | AAA family ATPase | - |
| OLM03_RS04080 (OLM03_04080) | - | 825669..826310 (+) | 642 | WP_002401957.1 | putative HNHc nuclease | - |
| OLM03_RS04085 (OLM03_04085) | - | 826316..826801 (+) | 486 | WP_033598031.1 | hypothetical protein | - |
| OLM03_RS04090 (OLM03_04090) | - | 826821..827672 (+) | 852 | WP_141417322.1 | DNA replication protein | - |
| OLM03_RS04095 (OLM03_04095) | - | 827672..827980 (+) | 309 | WP_002381633.1 | MazG-like family protein | - |
| OLM03_RS04100 (OLM03_04100) | ssb | 827970..828497 (+) | 528 | WP_063855925.1 | single-stranded DNA-binding protein | Machinery gene |
| OLM03_RS04105 (OLM03_04105) | - | 828510..828839 (+) | 330 | WP_063855926.1 | hypothetical protein | - |
| OLM03_RS04110 (OLM03_04110) | - | 828859..829065 (+) | 207 | WP_002395813.1 | hypothetical protein | - |
| OLM03_RS04115 (OLM03_04115) | - | 829083..829331 (+) | 249 | WP_264547528.1 | hypothetical protein | - |
| OLM03_RS04120 (OLM03_04120) | - | 829542..830024 (+) | 483 | WP_104888323.1 | hypothetical protein | - |
| OLM03_RS04125 (OLM03_04125) | - | 830021..830281 (+) | 261 | WP_002399914.1 | hypothetical protein | - |
| OLM03_RS04130 (OLM03_04130) | - | 830274..830681 (+) | 408 | WP_264547529.1 | DUF1642 domain-containing protein | - |
| OLM03_RS04135 (OLM03_04135) | - | 830864..831073 (+) | 210 | WP_113848049.1 | hypothetical protein | - |
| OLM03_RS04140 (OLM03_04140) | - | 831074..831493 (+) | 420 | WP_002404562.1 | transcriptional regulator | - |
| OLM03_RS04145 (OLM03_04145) | - | 833207..833560 (+) | 354 | WP_064687107.1 | phBC6A51 family helix-turn-helix protein | - |
| OLM03_RS04150 (OLM03_04150) | - | 833550..834824 (+) | 1275 | WP_224798902.1 | PBSX family phage terminase large subunit | - |
| OLM03_RS04155 (OLM03_04155) | - | 834837..836312 (+) | 1476 | WP_141417316.1 | phage portal protein | - |
| OLM03_RS04160 (OLM03_04160) | - | 836287..837333 (+) | 1047 | WP_141417315.1 | phage head morphogenesis protein | - |
| OLM03_RS04165 (OLM03_04165) | - | 837336..837656 (+) | 321 | WP_104884664.1 | hypothetical protein | - |
| OLM03_RS04170 (OLM03_04170) | - | 837661..837957 (+) | 297 | WP_156189951.1 | hypothetical protein | - |
| OLM03_RS04175 (OLM03_04175) | - | 837962..838204 (+) | 243 | WP_141417314.1 | glutaredoxin domain-containing protein | - |
| OLM03_RS04180 (OLM03_04180) | - | 838208..838471 (+) | 264 | WP_077932911.1 | DUF6275 family protein | - |
| OLM03_RS04185 (OLM03_04185) | - | 838611..839237 (+) | 627 | WP_141417313.1 | DUF4355 domain-containing protein | - |
| OLM03_RS04190 (OLM03_04190) | - | 839251..840153 (+) | 903 | WP_104858705.1 | DUF5309 family protein | - |
| OLM03_RS04195 (OLM03_04195) | - | 840177..840413 (+) | 237 | WP_002372022.1 | hypothetical protein | - |
| OLM03_RS04200 (OLM03_04200) | - | 840422..840766 (+) | 345 | WP_224798886.1 | hypothetical protein | - |
| OLM03_RS04205 (OLM03_04205) | - | 840763..841140 (+) | 378 | WP_002404932.1 | hypothetical protein | - |
| OLM03_RS04210 (OLM03_04210) | - | 841133..841531 (+) | 399 | WP_002395884.1 | HK97 gp10 family phage protein | - |
| OLM03_RS04215 (OLM03_04215) | - | 841535..841909 (+) | 375 | WP_016634615.1 | DUF6838 family protein | - |
| OLM03_RS04220 (OLM03_04220) | - | 841910..842752 (+) | 843 | WP_264547530.1 | major tail protein | - |
| OLM03_RS04225 (OLM03_04225) | gpG | 842805..843158 (+) | 354 | WP_002364485.1 | phage tail assembly chaperone G | - |
| OLM03_RS04230 (OLM03_04230) | - | 843407..846301 (+) | 2895 | WP_264547588.1 | tape measure protein | - |
| OLM03_RS04235 (OLM03_04235) | - | 846291..847025 (+) | 735 | WP_264547531.1 | phage tail protein | - |
| OLM03_RS04240 (OLM03_04240) | - | 847007..849814 (+) | 2808 | WP_264547532.1 | phage tail spike protein | - |
| OLM03_RS04245 (OLM03_04245) | - | 849833..850738 (+) | 906 | WP_264547533.1 | phage baseplate upper protein | - |
| OLM03_RS04250 (OLM03_04250) | - | 850735..851052 (+) | 318 | WP_264547534.1 | hypothetical protein | - |
| OLM03_RS04255 (OLM03_04255) | - | 851045..851362 (+) | 318 | WP_010823170.1 | hypothetical protein | - |
| OLM03_RS04260 (OLM03_04260) | - | 851362..851850 (+) | 489 | WP_264547535.1 | hypothetical protein | - |
| OLM03_RS04265 (OLM03_04265) | - | 851861..852181 (+) | 321 | WP_104874258.1 | hypothetical protein | - |
| OLM03_RS04270 (OLM03_04270) | - | 852183..852338 (+) | 156 | WP_002364192.1 | XkdX family protein | - |
| OLM03_RS04275 (OLM03_04275) | - | 852373..852594 (+) | 222 | WP_002406118.1 | hypothetical protein | - |
| OLM03_RS04280 (OLM03_04280) | - | 852587..852820 (+) | 234 | WP_264547536.1 | phage holin | - |
| OLM03_RS04285 (OLM03_04285) | - | 852821..854062 (+) | 1242 | WP_264547537.1 | LysM peptidoglycan-binding domain-containing protein | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19325.21 Da Isoelectric Point: 4.6968
>NTDB_id=751629 OLM03_RS04100 WP_063855925.1 827970..828497(+) (ssb) [Enterococcus faecalis strain BE47]
MINNVVLIGRLTKDIDLRYTASGSAVGSFTLAVNRNFTNQNGDREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYDNQQGQRVYVTEVVCESFQLLEPKSANENRNSIQSSQNSVTGVQNNFESNYATNQNKGLNQQNNSQQMSFGGDVDPFA
GAGNSIDISDDDLPF
MINNVVLIGRLTKDIDLRYTASGSAVGSFTLAVNRNFTNQNGDREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYDNQQGQRVYVTEVVCESFQLLEPKSANENRNSIQSSQNSVTGVQNNFESNYATNQNKGLNQQNNSQQMSFGGDVDPFA
GAGNSIDISDDDLPF
Nucleotide
Download Length: 528 bp
>NTDB_id=751629 OLM03_RS04100 WP_063855925.1 827970..828497(+) (ssb) [Enterococcus faecalis strain BE47]
ATGATAAATAATGTGGTATTAATCGGAAGGCTGACGAAAGATATAGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGG
AAGCTTTACTCTTGCTGTGAACCGTAACTTTACGAATCAAAATGGTGACCGTGAAGCAGACTTTATCAACTGTGTGATTT
GGCGTAAGCCTGCTGAAACAATGGCTAATTATGCTCGCAAAGGAACATTATTAGGAGTTGTTGGAAGAATTCAAACTCGT
AATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGAGCCAAAAAG
CGCCAATGAGAATAGAAATAGCATTCAGAGTTCACAGAATAGCGTTACAGGCGTTCAAAATAATTTCGAGAGTAATTATG
CCACGAATCAAAACAAAGGCTTAAATCAGCAAAATAACAGCCAACAAATGTCGTTTGGTGGAGATGTAGATCCGTTCGCA
GGCGCAGGTAATTCAATCGACATTAGCGATGATGATCTGCCGTTCTAG
ATGATAAATAATGTGGTATTAATCGGAAGGCTGACGAAAGATATAGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGG
AAGCTTTACTCTTGCTGTGAACCGTAACTTTACGAATCAAAATGGTGACCGTGAAGCAGACTTTATCAACTGTGTGATTT
GGCGTAAGCCTGCTGAAACAATGGCTAATTATGCTCGCAAAGGAACATTATTAGGAGTTGTTGGAAGAATTCAAACTCGT
AATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGAGCCAAAAAG
CGCCAATGAGAATAGAAATAGCATTCAGAGTTCACAGAATAGCGTTACAGGCGTTCAAAATAATTTCGAGAGTAATTATG
CCACGAATCAAAACAAAGGCTTAAATCAGCAAAATAACAGCCAACAAATGTCGTTTGGTGGAGATGTAGATCCGTTCGCA
GGCGCAGGTAATTCAATCGACATTAGCGATGATGATCTGCCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.989 |
100 |
0.6 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.865 |
100 |
0.589 |