Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OJ966_RS00040 Genome accession   NZ_CP109946
Coordinates   9252..9836 (+) Length   194 a.a.
NCBI ID   WP_264508445.1    Uniprot ID   -
Organism   Lactobacillus delbrueckii strain sunkii     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4252..14836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OJ966_RS00025 (OJ966_00025) gyrB 4258..6219 (+) 1962 WP_050951857.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  OJ966_RS00030 (OJ966_00030) gyrA 6231..8702 (+) 2472 WP_003612622.1 DNA gyrase subunit A -
  OJ966_RS00035 (OJ966_00035) rpsF 8918..9211 (+) 294 WP_147749207.1 30S ribosomal protein S6 -
  OJ966_RS00040 (OJ966_00040) ssb 9252..9836 (+) 585 WP_264508445.1 single-stranded DNA-binding protein Machinery gene
  OJ966_RS00045 (OJ966_00045) rpsR 9863..10099 (+) 237 WP_003612635.1 30S ribosomal protein S18 -
  OJ966_RS00050 (OJ966_00050) - 10240..12261 (+) 2022 WP_264508446.1 DHH family phosphoesterase -
  OJ966_RS00055 (OJ966_00055) rplI 12303..12758 (+) 456 WP_003612605.1 50S ribosomal protein L9 -
  OJ966_RS00060 (OJ966_00060) dnaB 12782..14152 (+) 1371 WP_003612625.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 20994.66 Da        Isoelectric Point: 4.6546

>NTDB_id=751211 OJ966_RS00040 WP_264508445.1 9252..9836(+) (ssb) [Lactobacillus delbrueckii strain sunkii]
MINNVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNASGQREADFISCVIWRKAAENFCNFTSKGSLVGIQGRIQTR
NYDNKDGQRVYVTEVLVDNFSLLESRRDRESRQQNGGFGGQGQSQNTGFNTRFGGDSGYANNNANAFGSPAQSNGPANAG
FNEDNKKDAGGDTNTNPFDSSDDAINVSNDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=751211 OJ966_RS00040 WP_264508445.1 9252..9836(+) (ssb) [Lactobacillus delbrueckii strain sunkii]
ATGATCAATAACGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGCGGCATCTCGGTTGC
TACGTTCACTTTAGCCGTTGACCGGCAGTTTACCAATGCATCAGGCCAGAGAGAAGCGGACTTCATCAGCTGCGTGATTT
GGCGCAAGGCTGCGGAGAACTTCTGCAACTTCACCAGCAAGGGCAGTTTGGTGGGCATCCAGGGCCGAATCCAGACCAGA
AACTATGATAACAAGGACGGCCAGCGAGTTTACGTGACAGAAGTCCTCGTGGACAACTTCTCACTGCTCGAATCACGCCG
CGATCGTGAAAGCCGTCAGCAAAACGGCGGATTTGGCGGCCAAGGTCAAAGCCAAAACACCGGCTTCAACACCAGATTTG
GCGGCGACAGCGGCTACGCCAACAACAACGCCAACGCCTTCGGCAGCCCGGCCCAGTCAAACGGGCCAGCTAATGCCGGA
TTCAATGAAGATAACAAGAAAGATGCCGGCGGAGACACGAACACCAACCCGTTCGACAGCTCTGACGATGCAATCAACGT
CTCAAATGACGATCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

55.838

100

0.567
  ssbA Bacillus subtilis subsp. subtilis str. 168

45.876

100

0.459