Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   Vgang_RS10285 Genome accession   NZ_AP021869
Coordinates   2232468..2233076 (+) Length   202 a.a.
NCBI ID   WP_105900726.1    Uniprot ID   -
Organism   Vibrio gangliei strain DSM 104291     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2227468..2238076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vgang_RS10260 panC 2228037..2228912 (+) 876 WP_105900731.1 pantoate--beta-alanine ligase -
  Vgang_RS10265 - 2229048..2229818 (-) 771 WP_105900730.1 ABC transporter permease -
  Vgang_RS10270 - 2229818..2230756 (-) 939 WP_105900729.1 ABC transporter ATP-binding protein -
  Vgang_RS10275 can 2230850..2231506 (+) 657 WP_105900728.1 carbonate dehydratase -
  Vgang_RS10280 hpt 2231672..2232202 (-) 531 WP_105900727.1 hypoxanthine phosphoribosyltransferase -
  Vgang_RS10285 opaR 2232468..2233076 (+) 609 WP_105900726.1 TetR/AcrR family transcriptional regulator Regulator
  Vgang_RS10290 acnB 2233176..2235773 (-) 2598 WP_105900725.1 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23509.88 Da        Isoelectric Point: 7.1177

>NTDB_id=75110 Vgang_RS10285 WP_105900726.1 2232468..2233076(+) (opaR) [Vibrio gangliei strain DSM 104291]
MDMITKRPRTRLTPEKRKQQLLNIGIEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVEAILSDVEQHFEAFLN
DNIDLSRPVRTNLQALSQKLIDMSLDDTQWIKIWFEWSTSTREDVWPLFVATHGKHQKYFRELFVNAIANGELNDKHHPS
NIAKLFHGICYSIFVQANRRPDKEYLTQLVTSFLDMLCIYKD

Nucleotide


Download         Length: 609 bp        

>NTDB_id=75110 Vgang_RS10285 WP_105900726.1 2232468..2233076(+) (opaR) [Vibrio gangliei strain DSM 104291]
ATGGATATGATAACCAAACGCCCAAGGACTCGGTTAACACCGGAGAAAAGAAAACAACAACTTCTAAATATCGGGATTGA
GGTCTTTGCTCGCCGTGGGATTGGCAGAGGTGGCCACGCTGATATCGCAGAAATTGCACAAGTTTCTGTTGCTACTGTGT
TTAACTACTTCCCGACCCGAGAAGATTTAGTCGAAGCCATTCTTAGCGATGTTGAACAGCACTTTGAAGCCTTCTTAAAC
GATAACATTGACCTAAGCCGTCCGGTTCGGACCAACCTACAAGCCTTATCTCAAAAACTTATCGATATGAGTTTGGATGA
TACACAATGGATCAAGATTTGGTTTGAATGGAGCACCTCGACCCGTGAAGATGTCTGGCCGCTTTTTGTCGCCACCCACG
GCAAACACCAGAAATACTTCCGTGAGTTATTCGTCAATGCGATTGCTAATGGCGAACTCAATGATAAGCATCACCCGAGT
AATATCGCTAAGTTATTCCACGGCATTTGCTATTCAATCTTTGTCCAAGCCAACCGTCGGCCTGATAAAGAATATTTAAC
CCAATTAGTCACCAGTTTCTTAGATATGCTGTGTATCTATAAAGATTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(24-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

60

99.01

0.594
  hapR Vibrio cholerae C6706

58.794

98.515

0.579
  hapR Vibrio cholerae strain A1552

58.794

98.515

0.579

Multiple sequence alignment