Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   OHM48_RS00740 Genome accession   NZ_CP109942
Coordinates   116304..116597 (+) Length   97 a.a.
NCBI ID   WP_024390433.1    Uniprot ID   -
Organism   Streptococcus suis strain ID35541     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 111304..121597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM48_RS00710 (OHM48_00710) - 112326..112691 (+) 366 WP_024417409.1 DUF1033 family protein -
  OHM48_RS00715 (OHM48_00715) - 112726..113676 (-) 951 WP_024417410.1 S66 peptidase family protein -
  OHM48_RS00720 (OHM48_00720) comYA 113762..114712 (+) 951 WP_024417411.1 competence type IV pilus ATPase ComGA Machinery gene
  OHM48_RS00725 (OHM48_00725) comYB 114624..115661 (+) 1038 WP_264490838.1 competence type IV pilus assembly protein ComGB Machinery gene
  OHM48_RS00730 (OHM48_00730) comYC 115663..115944 (+) 282 WP_009909092.1 competence type IV pilus major pilin ComGC Machinery gene
  OHM48_RS00735 (OHM48_00735) comGD 115925..116332 (+) 408 WP_024387070.1 competence type IV pilus minor pilin ComGD -
  OHM48_RS00740 (OHM48_00740) comYE 116304..116597 (+) 294 WP_024390433.1 competence type IV pilus minor pilin ComGE Machinery gene
  OHM48_RS00745 (OHM48_00745) comGF/cglF 116584..117018 (+) 435 WP_063725150.1 competence type IV pilus minor pilin ComGF Machinery gene
  OHM48_RS00750 (OHM48_00750) comGG 116996..117406 (+) 411 WP_009909099.1 competence type IV pilus minor pilin ComGG -
  OHM48_RS00755 (OHM48_00755) comYH 117463..118416 (+) 954 WP_024409299.1 class I SAM-dependent methyltransferase Machinery gene
  OHM48_RS00760 (OHM48_00760) - 118466..119653 (+) 1188 WP_014637319.1 acetate kinase -
  OHM48_RS00765 (OHM48_00765) - 119968..120519 (+) 552 WP_024417413.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10767.72 Da        Isoelectric Point: 9.6566

>NTDB_id=751076 OHM48_RS00740 WP_024390433.1 116304..116597(+) (comYE) [Streptococcus suis strain ID35541]
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDVGRRRQAWELEQQEVLNLAQMAVQTGQDKLALNGVTVQVQQTAD
KIIVFYEGKEVLSVVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=751076 OHM48_RS00740 WP_024390433.1 116304..116597(+) (comYE) [Streptococcus suis strain ID35541]
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATTTTGCTAGAAAGTCTGGTTGCCCTTGCGACTCTAGTGACTAT
TTGCAGCTTGATTTTATCAGCTGTGGATGTAGGTCGTAGGCGACAGGCTTGGGAATTGGAACAACAGGAGGTTCTCAATC
TAGCACAGATGGCTGTTCAGACCGGGCAAGATAAGCTAGCCTTAAACGGTGTTACAGTTCAGGTTCAACAAACAGCGGAT
AAGATCATTGTTTTCTACGAGGGAAAGGAGGTTTTATCGGTTGTTAAAAAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

53.608

100

0.536
  comYE Streptococcus mutans UA159

53.608

100

0.536
  comGE/cglE Streptococcus pneumoniae Rx1

43.158

97.938

0.423
  comGE/cglE Streptococcus pneumoniae D39

43.158

97.938

0.423
  comGE/cglE Streptococcus pneumoniae R6

43.158

97.938

0.423
  comGE/cglE Streptococcus pneumoniae TIGR4

43.158

97.938

0.423
  comGE/cglE Streptococcus mitis SK321

42.105

97.938

0.412
  comGE/cglE Streptococcus mitis NCTC 12261

42.105

97.938

0.412
  comGE Lactococcus lactis subsp. cremoris KW2

38.043

94.845

0.361