Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   OHM51_RS04030 Genome accession   NZ_CP109941
Coordinates   819887..821113 (+) Length   408 a.a.
NCBI ID   WP_002934974.1    Uniprot ID   G7SE29
Organism   Streptococcus suis strain ID38828     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 814887..826113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM51_RS03995 (OHM51_03995) - 815835..816170 (+) 336 WP_002934966.1 hypothetical protein -
  OHM51_RS04000 (OHM51_04000) - 816266..817225 (+) 960 WP_044772940.1 ROK family glucokinase -
  OHM51_RS04005 (OHM51_04005) - 817351..817629 (+) 279 WP_012775087.1 hypothetical protein -
  OHM51_RS04010 (OHM51_04010) - 817641..817943 (+) 303 WP_044685201.1 hypothetical protein -
  OHM51_RS04015 (OHM51_04015) - 817996..818835 (+) 840 WP_044754420.1 thymidylate synthase -
  OHM51_RS04020 (OHM51_04020) - 819177..819689 (+) 513 WP_044772938.1 dihydrofolate reductase -
  OHM51_RS04025 (OHM51_04025) - 819692..819865 (+) 174 WP_002934972.1 hypothetical protein -
  OHM51_RS04030 (OHM51_04030) clpX 819887..821113 (+) 1227 WP_002934974.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHM51_RS04035 (OHM51_04035) yihA 821167..821754 (+) 588 WP_012775089.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  OHM51_RS04040 (OHM51_04040) ndk 821777..822190 (+) 414 WP_012028095.1 nucleoside-diphosphate kinase -
  OHM51_RS04045 (OHM51_04045) - 822294..822965 (+) 672 WP_011922364.1 HIRAN domain-containing protein -
  OHM51_RS04050 (OHM51_04050) lepA 823247..825079 (+) 1833 WP_044666507.1 translation elongation factor 4 -
  OHM51_RS04055 (OHM51_04055) - 825129..825311 (-) 183 WP_002934978.1 4-oxalocrotonate tautomerase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45318.84 Da        Isoelectric Point: 4.6382

>NTDB_id=751036 OHM51_RS04030 WP_002934974.1 819887..821113(+) (clpX) [Streptococcus suis strain ID38828]
MAVKHTHELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHVDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNRAIDEKESYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLVRIL
TEPKNALVKQYQTLLSYDDVELDFDEDALLAIAEKAIERKTGARGLRSIIEETMLDVMFEVPGQDNVKRVRVTKAAVDGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=751036 OHM51_RS04030 WP_002934974.1 819887..821113(+) (clpX) [Streptococcus suis strain ID38828]
ATGGCTGTTAAGCATACACATGAGCTAATCTATTGCTCATTTTGCGGAAAAAATCAAGAAGAAGTTAAAAAAATTATCGC
TGGGAACAATGTCTTCATTTGTAATGAATGCGTGGAACTAGCACAGGAAATCATTCGTGAGGAACTGGCAGAAGAAGTTT
TGACAGACTTAGCCGATACGCCAAAGCCACAAGAATTACTCAATATCCTGAACAACTACGTCATCGGACAGGATCGTGCA
AAACGTGCTTTAGCAGTAGCCGTTTACAACCACTACAAACGTATCAATTTCCAGGATAGCCGTGATGAGAACGATGTTGA
TTTGCAAAAATCAAATATCCTTATGATTGGTCCGACTGGTTCAGGAAAAACCTTCCTAGCACAGACCTTGGCTAAAAGTT
TGAATGTCCCGTTTGCTATTGCTGATGCGACCGCTCTTACTGAGGCGGGTTATGTTGGTGAAGACGTAGAAAATATCCTC
CTCAAACTTTTGCAGGCTGCAGACTTTAACATCGACCGTGCAGAAAGAGGAATTATCTATGTGGATGAAATTGATAAAAT
TGCCAAAAAAGGTGAAAATGTGTCCATTACCCGCGATGTATCTGGTGAAGGTGTCCAGCAAGCTCTCCTAAAAATTATCG
AGGGAACTGTGGCCAGCGTACCACCACAAGGCGGACGCAAACATCCAAACCAAGAAATGATTCACGTGGACACCAAAAAT
ATCCTGTTCATCGTTGGCGGTGCATTTGATGGTATCGAAGAAATCGTCAAACAGCGTCTCGGTGAAAAAATCATCGGTTT
TGGTCATAATAATCGTGCTATTGATGAAAAAGAATCATACATGCAACATATCATTGCAGACGATATTCAAAAATTCGGTA
TCATTCCAGAGTTGATTGGTCGCTTGCCTGTATTTGCAGCTTTGGACCAATTGACAACAGAGGATTTGGTACGTATTTTG
ACGGAACCAAAGAATGCTCTTGTAAAACAATATCAGACACTCTTGTCTTATGATGACGTGGAGCTTGACTTTGATGAGGA
CGCCTTGTTAGCAATTGCAGAAAAAGCAATTGAACGTAAGACTGGCGCTCGTGGACTTCGTTCCATCATTGAAGAAACGA
TGTTGGATGTCATGTTTGAGGTGCCAGGCCAAGATAACGTTAAACGTGTTCGTGTAACAAAAGCAGCAGTAGACGGTAAG
GAAAAGCCTTTACTAGAAACTGCTTAA

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7SE29

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

83.13

100

0.833
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.209

98.529

0.574