Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   QEO82_RS07625 Genome accession   NZ_CP123346
Coordinates   1521985..1522722 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain AREA_486     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1516985..1527722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEO82_RS07610 (QEO82_07560) clpC 1517439..1520012 (-) 2574 WP_001539382.1 ATP-dependent chaperone ClpB Regulator
  QEO82_RS07615 (QEO82_07565) yfiH 1520142..1520873 (-) 732 WP_000040138.1 purine nucleoside phosphorylase YfiH -
  QEO82_RS07620 (QEO82_07570) rluD 1520870..1521850 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QEO82_RS07625 (QEO82_07575) comL 1521985..1522722 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  QEO82_RS07630 (QEO82_07580) raiA 1522992..1523333 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  QEO82_RS07635 (QEO82_07585) pheL 1523437..1523484 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  QEO82_RS07640 (QEO82_07590) pheA 1523583..1524743 (+) 1161 WP_000200106.1 bifunctional chorismate mutase/prephenate dehydratase -
  QEO82_RS07645 (QEO82_07595) tyrA 1524786..1525907 (-) 1122 WP_001539387.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  QEO82_RS07650 (QEO82_07600) aroF 1525918..1526988 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  QEO82_RS07655 (QEO82_07605) yfiL 1527198..1527563 (+) 366 WP_001298694.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=751032 QEO82_RS07625 WP_000197686.1 1521985..1522722(+) (comL) [Escherichia coli strain AREA_486]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=751032 QEO82_RS07625 WP_000197686.1 1521985..1522722(+) (comL) [Escherichia coli strain AREA_486]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376