Detailed information NTG0075098

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: Vgang_RS05445
• Genome accession: NZ_AP021869
• Coordinates: 1199393..1200817 (-)
• Length: 474 a.a.
• NCBI ID: WP_105902685.1
• Uniprot ID: -
• Organism: Vibrio gangliei strain DSM 104291
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1194393..1205817

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Vgang_RS05415	ihfA	1194640..1194936 (+)	297	WP_105902691.1	integration host factor subunit alpha	-
Vgang_RS05420	-	1195047..1195694 (+)	648	WP_105902690.1	thiopurine S-methyltransferase	-
Vgang_RS05425	purT	1195759..1196934 (-)	1176	WP_105902689.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
Vgang_RS05430	cdd	1197110..1198006 (-)	897	WP_105902688.1	cytidine deaminase	-
Vgang_RS05435	-	1198282..1198968 (-)	687	WP_105902687.1	CidB/LrgB family autolysis modulator	-
Vgang_RS05440	-	1198968..1199348 (-)	381	WP_105902686.1	CidA/LrgA family protein	-
Vgang_RS05445	sbcB	1199393..1200817 (-)	1425	WP_105902685.1	exodeoxyribonuclease I	Machinery gene
Vgang_RS05450	-	1200939..1201382 (-)	444	WP_105902805.1	TerB family tellurite resistance protein	-
Vgang_RS05455	-	1201566..1202255 (+)	690	WP_406708302.1	sulfite exporter TauE/SafE family protein	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54505.90 Da
• Isoelectric Point: 4.9300

>NTDB_id=75098 Vgang_RS05445 WP_105902685.1 1199393..1200817(-) (sbcB) [Vibrio gangliei strain DSM 104291]
MSHDNAPTFFFFDYETWGVSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPSDYLPSPEAALITGIKPQKAVKDGLPEP
EFIRRIHDQLSTPNTISLGYNSIRFDDEVTRYTLYRNFYDPYAWSWQNGNSRWDLLDIMRTCYALRPEGINWPENDEGFP
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKLKQAQPKLFNYLLSMRHKRKLNELVDIVNLTPLVHVSGMFGVQCSN
ISWIVPMAWHPTNNNAVITVNLAMDPTPLIELDVETLHQRLYTKRDDLAPDELPVPLKLVHLNKCPVLAPAKTLTAENAE
RIGIDREQCLANLAKLKAHPEVREKLIGIYNIERDYPQDNNVDTQLYNGFFSPADKATIDIIRETEPEKLAGLELSVSDP
RIEPLLFRYRARNFPWTLTEAEQQKWMAHCREYYEDNIEDYMLNLENLVHEHESDAAKMDILKSVYQYVQSLIS

Nucleotide

• Length: 1425 bp

>NTDB_id=75098 Vgang_RS05445 WP_105902685.1 1199393..1200817(-) (sbcB) [Vibrio gangliei strain DSM 104291]
ATGAGCCATGACAACGCCCCAACCTTTTTCTTTTTCGATTACGAAACTTGGGGTGTCAGTCCAGCTAAAGATCGCCCAAG
CCAATTTGCTGGCGTACGTACCGATATGGACTTCAACATCATTGGCGAACCTTTGGTGATTTATTGTCAGCCACCGAGCG
ATTATCTGCCTTCACCGGAAGCGGCATTAATCACAGGCATCAAGCCACAAAAAGCCGTAAAAGATGGATTACCAGAGCCT
GAATTTATTCGTCGTATTCACGATCAACTCTCGACCCCCAATACCATTTCATTAGGCTATAACAGCATTCGTTTTGACGA
TGAAGTCACCCGTTATACGCTTTACCGTAACTTCTATGACCCGTATGCGTGGTCCTGGCAAAATGGTAATTCTCGCTGGG
ATTTACTCGACATAATGCGTACTTGCTATGCTTTACGTCCTGAAGGCATTAACTGGCCAGAAAATGATGAAGGCTTTCCA
AGTTTCAAGCTTGAGCACCTATCCGTTGCCAATGGAATTGAACACAGTAATGCTCACGATGCGATGGCCGATGTGATCGC
TACTATCGAGCTGGCGAAAAAACTGAAACAAGCGCAACCGAAATTGTTTAATTATCTCCTTAGCATGCGTCATAAGCGTA
AGCTCAATGAGTTAGTCGATATCGTGAACTTAACCCCATTAGTGCATGTCTCTGGCATGTTTGGCGTGCAATGTTCTAAC
ATCAGTTGGATTGTGCCGATGGCGTGGCACCCGACGAACAACAATGCGGTCATTACCGTCAACTTGGCTATGGACCCAAC
GCCATTGATCGAGCTAGATGTAGAAACATTACATCAACGTTTGTACACCAAGCGTGATGACCTTGCTCCCGATGAGTTAC
CCGTGCCGTTGAAATTGGTTCACCTGAATAAATGTCCTGTATTGGCACCGGCAAAAACATTAACCGCTGAAAACGCGGAG
CGAATTGGGATTGACCGCGAGCAATGCTTAGCAAACCTTGCCAAGCTCAAAGCACATCCAGAAGTTCGAGAAAAACTGAT
TGGTATTTACAACATTGAACGTGATTACCCGCAAGATAATAACGTTGATACCCAGCTCTATAATGGTTTCTTCTCACCTG
CCGACAAAGCAACGATTGATATTATTCGTGAAACTGAGCCAGAGAAACTCGCCGGGCTAGAGCTGTCGGTGAGCGATCCA
CGCATCGAACCACTATTGTTCCGCTACCGCGCTCGCAATTTCCCATGGACATTAACCGAAGCCGAGCAACAAAAATGGAT
GGCCCACTGCCGTGAATACTACGAAGACAATATTGAAGATTACATGTTGAACTTAGAAAACCTTGTTCACGAGCATGAAA
GCGATGCCGCAAAAATGGATATTCTCAAATCAGTTTATCAATACGTTCAGTCTTTAATATCTTAG

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	74.788	99.578	0.745