Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   Vgang_RS00930 Genome accession   NZ_AP021869
Coordinates   198218..198928 (-) Length   236 a.a.
NCBI ID   WP_105902650.1    Uniprot ID   -
Organism   Vibrio gangliei strain DSM 104291     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 193218..203928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vgang_RS00905 - 194648..195157 (+) 510 WP_105902654.1 type II secretion system protein M -
  Vgang_RS00910 - 195169..195927 (+) 759 WP_157946032.1 type II secretion system protein N -
  Vgang_RS00915 nudE 195997..196566 (+) 570 WP_105902653.1 ADP compounds hydrolase NudE -
  Vgang_RS00920 cysQ 196570..197397 (+) 828 WP_105902652.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  Vgang_RS00925 nfuA 197545..198132 (-) 588 WP_105902651.1 Fe-S biogenesis protein NfuA -
  Vgang_RS00930 comF 198218..198928 (-) 711 WP_105902650.1 ComF family protein Machinery gene
  Vgang_RS00935 bioH 199012..199806 (+) 795 WP_245879946.1 pimeloyl-ACP methyl ester esterase BioH -
  Vgang_RS00940 - 199991..200752 (-) 762 WP_105902648.1 DeoR/GlpR family transcriptional regulator -
  Vgang_RS00945 glpD 200861..202423 (-) 1563 WP_105902647.1 glycerol-3-phosphate dehydrogenase -
  Vgang_RS00950 - 202700..203551 (+) 852 WP_157946031.1 MIP/aquaporin family protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27341.87 Da        Isoelectric Point: 9.6823

>NTDB_id=75087 Vgang_RS00930 WP_105902650.1 198218..198928(-) (comF) [Vibrio gangliei strain DSM 104291]
MKLLQSLLAWLPRQCHLCRLTLSEIPRHSLWCDTCVERLTSSAPRCQDCGLTTLHTVAQCGQCLSEPPPWDRLYCINDYK
APLKEYIQQLKYQRQFWLAADLAPLLADKIENPAPELIPVPLHWRRMWRRGFNQSSELAEQLARTWRKQNKSYCVNHEIL
RRVIATPQQKGLDKKQRLRNTRHAFQLVQPPKHDHVALVDDVVTTGATIKPICQALRKAGVKHIDVYCLSRTPSPK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=75087 Vgang_RS00930 WP_105902650.1 198218..198928(-) (comF) [Vibrio gangliei strain DSM 104291]
ATGAAATTACTACAATCCCTATTGGCTTGGCTACCTCGGCAATGCCATTTATGTCGCTTAACCCTCTCCGAGATACCGCG
ACATTCGTTATGGTGCGACACTTGTGTTGAGCGACTCACGTCATCCGCACCTCGTTGCCAAGATTGTGGCCTGACGACAC
TACATACGGTTGCACAATGCGGCCAATGCCTCTCAGAGCCACCACCTTGGGATCGTTTGTATTGCATCAACGATTATAAA
GCGCCACTGAAAGAATATATTCAGCAGTTAAAATACCAGCGTCAATTTTGGCTAGCCGCGGATCTTGCGCCTTTGTTAGC
GGATAAGATTGAAAATCCAGCGCCAGAATTGATTCCAGTGCCTTTGCATTGGCGCAGAATGTGGAGACGTGGTTTTAATC
AAAGTAGTGAGTTGGCAGAGCAATTGGCTCGAACTTGGCGCAAACAAAACAAATCCTATTGTGTAAACCATGAAATATTG
CGACGAGTGATCGCCACCCCACAACAAAAAGGGCTCGATAAAAAACAGCGGTTACGCAATACCCGTCATGCCTTCCAACT
CGTTCAACCACCCAAACATGACCATGTGGCTTTGGTGGACGATGTCGTCACGACCGGTGCCACCATAAAGCCAATTTGCC
AAGCCTTGCGTAAAGCCGGAGTGAAACACATTGATGTGTACTGTTTATCGCGCACCCCATCACCTAAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(187-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

52.915

94.492

0.5
  comF Vibrio campbellii strain DS40M4

42.06

98.729

0.415
  comF Haemophilus influenzae 86-028NP

37.712

100

0.377
  comF Haemophilus influenzae Rd KW20

37.131

100

0.373

Multiple sequence alignment