Detailed information NTG0750518

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OK021_RS11835
• Genome accession: NZ_CP109906
• Coordinates: 2575992..2576885 (-)
• Length: 297 a.a.
• NCBI ID: WP_154833621.1
• Uniprot ID: -
• Organism: Delftia sp. UGAL515B_04
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2570992..2581885

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OK021_RS11805 (OK021_11805)	argJ	2571318..2572550 (+)	1233	WP_016445603.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
OK021_RS11810 (OK021_11810)	-	2572716..2573672 (+)	957	WP_154833619.1	ATP-binding protein	-
OK021_RS11815 (OK021_11815)	-	2573723..2574229 (+)	507	WP_016445605.1	(deoxy)nucleoside triphosphate pyrophosphohydrolase	-
OK021_RS11820 (OK021_11820)	-	2574240..2574494 (-)	255	WP_016451023.1	DNA gyrase inhibitor YacG	-
OK021_RS11825 (OK021_11825)	zapD	2574494..2575249 (-)	756	WP_016445607.1	cell division protein ZapD	-
OK021_RS11830 (OK021_11830)	coaE	2575339..2575977 (-)	639	WP_154833620.1	dephospho-CoA kinase	-
OK021_RS11835 (OK021_11835)	pilD	2575992..2576885 (-)	894	WP_154833621.1	prepilin peptidase	Machinery gene
OK021_RS11840 (OK021_11840)	pilC	2576885..2578102 (-)	1218	WP_017405526.1	type II secretion system F family protein	Machinery gene
OK021_RS11845 (OK021_11845)	pilB	2578141..2579883 (-)	1743	WP_034364744.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OK021_RS11855 (OK021_11855)	-	2580120..2581049 (-)	930	WP_213757994.1	polyprenyl synthetase family protein	-
OK021_RS11860 (OK021_11860)	rplU	2581280..2581591 (+)	312	WP_012207284.1	50S ribosomal protein L21	-
OK021_RS11865 (OK021_11865)	rpmA	2581607..2581864 (+)	258	WP_012207283.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 297 a.a.
• Molecular weight: 31842.41 Da
• Isoelectric Point: 7.2386

>NTDB_id=750518 OK021_RS11835 WP_154833621.1 2575992..2576885(-) (pilD) [Delftia sp. UGAL515B_04]
MVLELWMQAALGGLLGLLVGSFLNVVVHRLPRMMEQQWNAECAQWAQEKSSSSATPSPATAPPPAEAPLSLSRPRSRCPH
CGHAIHWYENIPVLSYLALRGRCSECKASISIRYPLVELACAALFAYCAAQWGITPTGAAWCLFSAALLSLALIDWDTTL
LPDDITLPLLWAGLLSSALHWTAVPLADAVWGAAAGYLSLWLVYWAFKLATGKEGMGYGDFKLFAALGAWFGWQALVPII
LISSVIGAIVGIALKINSRLREGGYVPFGPFLAGAGFAAMVFGPQQMLQSLLAALGL

Nucleotide

• Length: 894 bp

>NTDB_id=750518 OK021_RS11835 WP_154833621.1 2575992..2576885(-) (pilD) [Delftia sp. UGAL515B_04]
ATGGTTTTGGAACTCTGGATGCAGGCTGCATTGGGCGGCCTGCTGGGCCTGTTGGTTGGCAGCTTTCTCAACGTGGTGGT
GCATAGGCTGCCCCGCATGATGGAACAGCAATGGAATGCGGAATGCGCCCAATGGGCGCAAGAGAAATCTTCATCCTCCG
CCACGCCATCGCCCGCCACAGCGCCGCCGCCTGCCGAGGCGCCCCTGAGCCTGAGCCGCCCCCGCTCGCGCTGCCCGCAT
TGCGGCCATGCCATCCACTGGTACGAGAATATTCCCGTGCTCAGTTATCTGGCGCTGCGAGGCCGGTGCTCCGAATGCAA
GGCGTCGATCAGCATCCGCTATCCGCTGGTGGAATTGGCCTGCGCCGCGCTGTTTGCCTACTGTGCGGCGCAATGGGGCA
TCACGCCCACAGGCGCTGCCTGGTGCCTTTTCAGTGCGGCCTTGCTGAGCCTGGCATTGATCGACTGGGACACCACACTG
CTTCCCGACGACATCACCCTGCCCTTGCTGTGGGCCGGACTGCTGTCGTCGGCGCTGCACTGGACCGCCGTGCCTCTGGC
CGACGCGGTATGGGGCGCTGCAGCGGGCTATCTCTCGCTGTGGCTGGTTTACTGGGCCTTCAAGCTGGCCACCGGCAAGG
AAGGCATGGGCTACGGCGACTTCAAGCTGTTTGCCGCGCTGGGCGCCTGGTTCGGCTGGCAGGCACTCGTGCCCATCATC
CTGATCTCGTCGGTGATTGGCGCCATCGTGGGCATCGCGTTGAAGATCAACAGCCGCCTGCGTGAGGGCGGCTATGTTCC
CTTCGGCCCCTTTCTGGCGGGCGCCGGCTTTGCAGCCATGGTGTTCGGACCGCAGCAGATGCTGCAATCCCTATTGGCGG
CCTTGGGCCTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-131)

• Type IV leader peptidase family (Peptidase_A24) (143-252)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.59	95.286	0.492
pilD	Vibrio campbellii strain DS40M4	46.416	98.653	0.458
pilD	Acinetobacter nosocomialis M2	44.364	92.593	0.411
pilD	Neisseria gonorrhoeae MS11	45.865	89.562	0.411
pilD	Acinetobacter baumannii D1279779	44	92.593	0.407