Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   N4680_RS05930 Genome accession   NZ_CP123255
Coordinates   1203385..1204122 (-) Length   245 a.a.
NCBI ID   WP_000197689.1    Uniprot ID   -
Organism   Escherichia coli strain YZMc17-1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1198385..1209122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4680_RS05900 (N4680_05900) yfiL 1198543..1198908 (-) 366 WP_001314943.1 DUF2799 domain-containing protein -
  N4680_RS05905 (N4680_05905) aroF 1199118..1200188 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  N4680_RS05910 (N4680_05910) tyrA 1200199..1201320 (+) 1122 WP_000225220.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  N4680_RS05915 (N4680_05915) pheA 1201363..1202523 (-) 1161 WP_020233815.1 bifunctional chorismate mutase/prephenate dehydratase -
  N4680_RS05920 (N4680_05920) pheL 1202622..1202669 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  N4680_RS05925 (N4680_05925) raiA 1202773..1203114 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  N4680_RS05930 (N4680_05930) comL 1203385..1204122 (-) 738 WP_000197689.1 outer membrane protein assembly factor BamD Machinery gene
  N4680_RS05935 (N4680_05935) rluD 1204257..1205237 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  N4680_RS05940 (N4680_05940) yfiH 1205234..1205965 (+) 732 WP_001520329.1 purine nucleoside phosphorylase YfiH -
  N4680_RS05945 (N4680_05945) clpC 1206095..1208668 (+) 2574 WP_024176393.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27828.45 Da        Isoelectric Point: 7.9331

>NTDB_id=749859 N4680_RS05930 WP_000197689.1 1203385..1204122(-) (comL) [Escherichia coli strain YZMc17-1]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAKYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=749859 N4680_RS05930 WP_000197689.1 1203385..1204122(-) (comL) [Escherichia coli strain YZMc17-1]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCATATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCTCGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCAAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTAATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376