Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   N4691_RS06145 Genome accession   NZ_CP123244
Coordinates   1266187..1266924 (-) Length   245 a.a.
NCBI ID   WP_096853665.1    Uniprot ID   -
Organism   Escherichia coli strain YZMc3-1     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1261187..1271924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4691_RS06115 (N4691_06115) yfiL 1261345..1261710 (-) 366 WP_001301878.1 DUF2799 domain-containing protein -
  N4691_RS06120 (N4691_06120) aroF 1261920..1262990 (+) 1071 WP_001168032.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  N4691_RS06125 (N4691_06125) tyrA 1263001..1264122 (+) 1122 WP_000225204.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  N4691_RS06130 (N4691_06130) pheA 1264165..1265325 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  N4691_RS06135 (N4691_06135) pheL 1265424..1265471 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  N4691_RS06140 (N4691_06140) raiA 1265575..1265916 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  N4691_RS06145 (N4691_06145) comL 1266187..1266924 (-) 738 WP_096853665.1 outer membrane protein assembly factor BamD Machinery gene
  N4691_RS06150 (N4691_06150) rluD 1267059..1268039 (+) 981 WP_000079091.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  N4691_RS06155 (N4691_06155) yfiH 1268036..1268767 (+) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  N4691_RS06160 (N4691_06160) clpC 1268897..1271470 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27843.42 Da        Isoelectric Point: 6.4884

>NTDB_id=749696 N4691_RS06145 WP_096853665.1 1266187..1266924(-) (comL) [Escherichia coli strain YZMc3-1]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIERFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=749696 N4691_RS06145 WP_096853665.1 1266187..1266924(-) (comL) [Escherichia coli strain YZMc3-1]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGAGCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGAGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

38.115

99.592

0.38
  comL Neisseria meningitidis MC58

38.115

99.592

0.38