Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdK   Type   Machinery gene
Locus tag   OH143_RS04260 Genome accession   NZ_CP109831
Coordinates   843280..844329 (-) Length   349 a.a.
NCBI ID   WP_011844836.1    Uniprot ID   A0AAX3EDE7
Organism   Methanoculleus submarinus strain DSM 15122     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 838280..849329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH143_RS04230 (OH143_04230) - 838355..838615 (+) 261 WP_011844830.1 hypothetical protein -
  OH143_RS04235 (OH143_04235) - 838622..838957 (-) 336 WP_011844831.1 hypothetical protein -
  OH143_RS04240 (OH143_04240) yciH 839086..839391 (-) 306 WP_011844832.1 stress response translation initiation inhibitor YciH -
  OH143_RS04245 (OH143_04245) - 839435..841081 (-) 1647 WP_011844833.1 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase -
  OH143_RS04250 (OH143_04250) - 841141..842619 (+) 1479 WP_011844834.1 cobyric acid synthase -
  OH143_RS04255 (OH143_04255) - 842626..843207 (+) 582 WP_011844835.1 GrpB family protein -
  OH143_RS04260 (OH143_04260) epdK 843280..844329 (-) 1050 WP_011844836.1 type II secretion system F family protein Machinery gene
  OH143_RS04265 (OH143_04265) epdJ 844331..845254 (-) 924 WP_011844837.1 type II secretion system F family protein Machinery gene
  OH143_RS04270 (OH143_04270) epdL 845251..847626 (-) 2376 WP_011844838.1 type II/IV secretion system ATPase subunit Machinery gene
  OH143_RS04275 (OH143_04275) - 847727..848365 (-) 639 WP_011844839.1 hypothetical protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 38910.08 Da        Isoelectric Point: 4.9317

>NTDB_id=749676 OH143_RS04260 WP_011844836.1 843280..844329(-) (epdK) [Methanoculleus submarinus strain DSM 15122]
MGFKDLFNDFLNRRPSDQERIPEDTPDADRFVEQDQEIFGRIENWQKYQEGFYRFLKHPFRVMMEEPYTVLFVSVPVALL
LFIGGFVSMVTSYGIGALFTTTMIDDVFVFALLIAIVPLGLLDFKEAWRVSSVEASLPNFFRDVAGMNDSGMTLPHAIHI
VSEGEYGALTPHIRKLDTEMSWGVPFVEAIRRFGKTVNTPLAERSVDLIAHASSAGGDVSEVLRAAAHDAYEFFNLKTER
KNGMMIYMIIILMSFFVFLFVIGVLSGTFLTTMAEAGEAVSASGSSSAQSFMGNVDLFLYNRIFCHSALIQGFFSGLAAG
IMGEGRVVGGLKYSALMVMIAWIAFRFII

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=749676 OH143_RS04260 WP_011844836.1 843280..844329(-) (epdK) [Methanoculleus submarinus strain DSM 15122]
ATGGGATTTAAAGATCTTTTCAATGATTTCTTGAACAGGAGACCTTCGGATCAGGAGAGGATCCCGGAGGATACTCCGGA
TGCCGACCGGTTCGTGGAGCAGGACCAGGAGATCTTCGGCAGGATTGAGAACTGGCAGAAGTACCAGGAAGGGTTTTACC
GGTTCCTCAAACACCCGTTCAGGGTGATGATGGAGGAGCCCTACACCGTCCTCTTCGTATCCGTCCCGGTTGCGCTGCTC
CTCTTTATCGGCGGGTTCGTGAGCATGGTGACGTCCTACGGCATCGGCGCCCTCTTCACGACGACGATGATCGACGACGT
CTTCGTCTTCGCGCTCCTCATTGCCATCGTGCCGCTTGGCCTTCTCGATTTCAAGGAGGCGTGGCGCGTATCGAGCGTCG
AGGCGTCCCTTCCGAACTTTTTCCGGGACGTGGCCGGGATGAACGATTCAGGTATGACGCTCCCGCATGCCATTCATATC
GTCTCGGAGGGCGAATACGGGGCGCTCACACCGCACATCCGCAAACTCGACACCGAGATGTCCTGGGGTGTCCCGTTCGT
GGAGGCCATCCGCCGGTTCGGAAAGACCGTGAATACCCCGCTCGCGGAGCGGAGCGTCGACCTGATCGCCCACGCGAGCT
CCGCCGGCGGTGACGTGAGCGAGGTGCTGCGGGCGGCGGCACACGATGCTTACGAGTTCTTCAACTTAAAGACGGAGCGC
AAAAACGGGATGATGATCTACATGATCATCATCCTGATGTCGTTCTTCGTCTTCCTCTTCGTCATCGGGGTGCTTTCGGG
CACCTTCCTCACCACGATGGCGGAGGCGGGGGAGGCGGTCTCTGCGTCGGGCTCGAGTTCGGCCCAGTCGTTCATGGGCA
ACGTGGACCTCTTCCTCTACAACCGGATCTTCTGTCACTCCGCGCTGATTCAGGGATTCTTCTCGGGGCTGGCGGCGGGC
ATCATGGGCGAAGGCCGGGTGGTCGGTGGGCTGAAGTACTCGGCGCTGATGGTCATGATCGCCTGGATCGCGTTCCGGTT
CATCATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(140-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdK Methanoculleus thermophilus strain DSM 2373

80.682

100

0.814