Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdJ   Type   Machinery gene
Locus tag   OH143_RS04265 Genome accession   NZ_CP109831
Coordinates   844331..845254 (-) Length   307 a.a.
NCBI ID   WP_011844837.1    Uniprot ID   A0AAX3EAZ9
Organism   Methanoculleus submarinus strain DSM 15122     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 839331..850254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH143_RS04245 (OH143_04245) - 839435..841081 (-) 1647 WP_011844833.1 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase -
  OH143_RS04250 (OH143_04250) - 841141..842619 (+) 1479 WP_011844834.1 cobyric acid synthase -
  OH143_RS04255 (OH143_04255) - 842626..843207 (+) 582 WP_011844835.1 GrpB family protein -
  OH143_RS04260 (OH143_04260) epdK 843280..844329 (-) 1050 WP_011844836.1 type II secretion system F family protein Machinery gene
  OH143_RS04265 (OH143_04265) epdJ 844331..845254 (-) 924 WP_011844837.1 type II secretion system F family protein Machinery gene
  OH143_RS04270 (OH143_04270) epdL 845251..847626 (-) 2376 WP_011844838.1 type II/IV secretion system ATPase subunit Machinery gene
  OH143_RS04275 (OH143_04275) - 847727..848365 (-) 639 WP_011844839.1 hypothetical protein -
  OH143_RS04280 (OH143_04280) - 848737..849543 (+) 807 WP_011844840.1 A24 family peptidase C-terminal domain-containing protein -
  OH143_RS04285 (OH143_04285) hisI 849550..849915 (+) 366 WP_011844841.1 phosphoribosyl-AMP cyclohydrolase -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34033.67 Da        Isoelectric Point: 5.8490

>NTDB_id=749677 OH143_RS04265 WP_011844837.1 844331..845254(-) (epdJ) [Methanoculleus submarinus strain DSM 15122]
MNSYERFCFNLIGHGLKKKRGDYISLRNDLMGARMNTPFEAYLATAYVSSVAVGLAAAALLGLLAYLLRIPDMIVYRGAV
PEVLYALNDYKMLLGTVAITVISLLVFGGITYLIYLLYPGIKAGERRRNIDATLPYAINYVTAMSSAGITPDEVFRLLGQ
STIYGESAVEARYISRETDFFGKDLLDALRTVSQATPSERMREFLQGAVASISSGSNLTEYFRNKAHQYTLENNQQQKSF
LETLGLIAESYVTAMVAGMLFLIILQSVMTILSGDSDPFFLYVIIYMIVPFGSMMFVVLISSMTPEV

Nucleotide


Download         Length: 924 bp        

>NTDB_id=749677 OH143_RS04265 WP_011844837.1 844331..845254(-) (epdJ) [Methanoculleus submarinus strain DSM 15122]
ATGAACAGTTACGAGCGGTTCTGCTTCAACCTGATCGGGCACGGCCTGAAAAAGAAGCGGGGAGACTACATCAGCCTCCG
AAACGACCTGATGGGAGCCCGGATGAATACGCCGTTCGAGGCGTATCTTGCGACCGCTTACGTTTCCTCGGTCGCCGTGG
GGCTGGCCGCCGCCGCGCTCCTCGGGCTCCTGGCCTACCTCCTGCGGATTCCCGATATGATCGTCTATCGCGGAGCGGTT
CCGGAAGTCCTGTATGCGTTGAACGACTACAAGATGCTGCTCGGCACCGTTGCCATCACGGTCATTTCTCTCCTGGTGTT
CGGGGGGATAACCTACCTGATCTACCTCCTCTATCCGGGTATAAAGGCAGGAGAACGTCGCCGGAATATCGATGCCACCC
TCCCGTATGCCATTAACTACGTCACCGCCATGTCTTCGGCCGGGATCACCCCCGACGAGGTCTTCCGGCTGCTCGGCCAG
AGCACGATATACGGGGAAAGCGCCGTCGAAGCGCGCTACATCTCCCGGGAAACCGATTTCTTCGGGAAGGATCTTCTCGA
TGCCCTGCGGACGGTCTCGCAGGCGACGCCGAGCGAACGGATGCGGGAGTTCCTGCAGGGAGCCGTTGCGAGCATCTCCA
GCGGGAGCAACCTCACGGAGTACTTCCGCAACAAGGCTCACCAGTACACGCTCGAGAACAACCAGCAGCAGAAGTCGTTT
TTAGAGACGCTCGGGCTGATCGCGGAGTCCTACGTCACCGCGATGGTCGCCGGCATGCTCTTTCTGATCATCCTGCAGTC
GGTGATGACGATCCTCTCGGGCGACTCGGATCCGTTCTTCCTCTACGTCATCATCTACATGATTGTGCCGTTCGGGAGCA
TGATGTTCGTCGTCCTGATCAGTTCCATGACTCCGGAGGTGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(138-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdJ Methanoculleus thermophilus strain DSM 2373

87.622

100

0.876