Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   OH128_RS01700 Genome accession   NZ_CP109813
Coordinates   331611..332786 (+) Length   391 a.a.
NCBI ID   WP_002781160.1    Uniprot ID   A0A0Q2ISE7
Organism   Campylobacter coli strain CC20JX12     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 326611..337786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH128_RS01675 (OH128_01675) ctsR 327189..327500 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  OH128_RS01680 (OH128_01680) ctsD 327478..328896 (+) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  OH128_RS01685 (OH128_01685) ctsP 328889..329485 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  OH128_RS01690 (OH128_01690) - 329482..330069 (+) 588 WP_002810825.1 CDC27 family protein -
  OH128_RS01695 (OH128_01695) ctsE 330062..331624 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  OH128_RS01700 (OH128_01700) ctsF 331611..332786 (+) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  OH128_RS01705 (OH128_01705) - 332783..333547 (-) 765 WP_002784060.1 TSUP family transporter -
  OH128_RS01710 (OH128_01710) - 333550..334314 (-) 765 WP_002781156.1 TIGR02757 family protein -
  OH128_RS01715 (OH128_01715) flgK 334331..336157 (-) 1827 WP_002799095.1 flagellar hook-associated protein FlgK -
  OH128_RS01720 (OH128_01720) - 336167..336601 (-) 435 WP_002779263.1 flagellar protein FlgN -
  OH128_RS01725 (OH128_01725) flgM 336644..336841 (-) 198 WP_002779262.1 flagellar biosynthesis anti-sigma factor FlgM -
  OH128_RS01730 (OH128_01730) - 336904..337245 (-) 342 WP_002784057.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 45518.35 Da        Isoelectric Point: 9.4461

>NTDB_id=749542 OH128_RS01700 WP_002781160.1 331611..332786(+) (ctsF) [Campylobacter coli strain CC20JX12]
MKLYELEIKGKTKQTKHLRAKNLNEAQAKAIAKKWEILNIKEIQKASFKRLDDARFILFFQELSLLCEVGISIKDALKEL
DKIYSHKMIAKLCDNLNLGQNLSLAFENANFGLTHAELALIKTSQNTGKLSEIFMQISRLRQNNVENEQRVKKALRYPLI
VFLSVCAAFVLLMLFVVPNFKDLFEDLNLALPFITELIIYIYNFLDKYILLVFCLIALILFLTLFLYRKYYFFSYFCDSL
LLKLPLLSKFIIYQQNYSFFMIFSLLLKSGISLLEAFKLATLALNNKKVLLYYQEIRTFMDSGLEISHAFKKVDLFDPLV
FSMLSIAMKSSKLEFLSEEIAKYYKNKSENLMDKFLSFLEPIMTLWVAILVLFLALGIFLPIWELSSGVNF

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=749542 OH128_RS01700 WP_002781160.1 331611..332786(+) (ctsF) [Campylobacter coli strain CC20JX12]
ATGAAGCTTTATGAGCTCGAGATTAAAGGCAAAACAAAACAGACAAAGCATTTAAGGGCTAAAAATTTAAACGAAGCTCA
AGCAAAAGCTATCGCTAAAAAATGGGAAATTTTAAATATCAAAGAGATACAAAAAGCAAGTTTTAAAAGATTAGATGATG
CAAGATTTATCCTTTTCTTTCAAGAATTATCTTTGCTTTGCGAAGTAGGAATCAGCATAAAAGATGCTTTAAAGGAGCTT
GATAAAATATATTCTCACAAGATGATTGCCAAGCTTTGCGATAATTTAAATTTAGGACAAAATTTAAGCCTTGCTTTTGA
AAATGCAAATTTTGGGCTTACTCATGCGGAATTAGCCCTTATTAAAACTTCCCAAAACACAGGAAAATTAAGTGAAATTT
TCATGCAAATTTCAAGATTAAGACAAAATAATGTAGAAAATGAACAAAGAGTCAAAAAAGCTTTAAGATATCCTTTGATT
GTTTTTTTAAGTGTGTGCGCGGCTTTTGTTTTACTCATGCTTTTTGTTGTGCCTAATTTTAAAGATTTATTTGAGGATTT
AAATTTAGCCTTACCCTTTATAACCGAGCTTATAATTTATATTTATAATTTTTTGGATAAGTATATTTTGCTTGTGTTTT
GTTTGATCGCACTTATTTTATTTCTTACTTTATTTTTGTATAGAAAATATTATTTCTTTTCATATTTTTGCGATAGCTTG
CTTTTAAAACTTCCTTTGTTGTCTAAATTTATTATTTATCAGCAAAATTATTCTTTTTTTATGATTTTCTCTTTACTTTT
AAAAAGCGGCATTTCTCTTTTGGAAGCTTTTAAATTAGCCACTTTGGCCTTAAATAATAAAAAGGTATTATTGTATTATC
AAGAAATTAGAACATTTATGGATTCTGGCCTTGAAATAAGTCACGCCTTTAAAAAAGTAGATCTTTTTGATCCTTTGGTT
TTTTCTATGTTGAGTATAGCTATGAAAAGTTCTAAGCTTGAGTTTTTGAGCGAGGAGATTGCGAAATATTATAAAAACAA
AAGTGAAAATTTAATGGACAAGTTTTTAAGCTTTTTAGAACCTATAATGACTTTATGGGTTGCGATTTTAGTATTGTTTT
TAGCACTTGGAATTTTTTTACCTATATGGGAACTTAGCTCAGGAGTAAATTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(262-381)

Type II secretion system (T2SS), protein F (T2SSF)

(59-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2ISE7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

60.66

100

0.611