Detailed information NTG0749539

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: OH128_RS01680
• Genome accession: NZ_CP109813
• Coordinates: 327478..328896 (+)
• Length: 472 a.a.
• NCBI ID: WP_002779315.1
• Uniprot ID: -
• Organism: Campylobacter coli strain CC20JX12
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 322478..333896

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OH128_RS01665 (OH128_01665)	-	323418..323501 (+)	84	Protein_321	HAD family hydrolase	-
OH128_RS01670 (OH128_01670)	nifJ	323605..327165 (+)	3561	WP_002779317.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
OH128_RS01675 (OH128_01675)	ctsR	327189..327500 (+)	312	WP_002779316.1	hypothetical protein	Machinery gene
OH128_RS01680 (OH128_01680)	ctsD	327478..328896 (+)	1419	WP_002779315.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
OH128_RS01685 (OH128_01685)	ctsP	328889..329485 (+)	597	WP_002779314.1	ATP-binding protein	Machinery gene
OH128_RS01690 (OH128_01690)	-	329482..330069 (+)	588	WP_002810825.1	CDC27 family protein	-
OH128_RS01695 (OH128_01695)	ctsE	330062..331624 (+)	1563	WP_002779312.1	GspE/PulE family protein	Machinery gene
OH128_RS01700 (OH128_01700)	ctsF	331611..332786 (+)	1176	WP_002781160.1	type II secretion system F family protein	Machinery gene
OH128_RS01705 (OH128_01705)	-	332783..333547 (-)	765	WP_002784060.1	TSUP family transporter	-

Sequence

Protein

• Length: 472 a.a.
• Molecular weight: 53513.05 Da
• Isoelectric Point: 6.5150

>NTDB_id=749539 OH128_RS01680 WP_002779315.1 327478..328896(+) (ctsD) [Campylobacter coli strain CC20JX12]
MIRLIFIKILFFTNLIYAMECQKRLFDININEDLSIEESLKELASYCSFSVVIKDTIAKEKLKAIQSSINIHQMSLDEIF
KLFIEEQDLAYKFDGKILKISALQTRIFKINYITSVREGQSITKASVDSKPRQSEYYSAFEDNEDNMIKSMEKFDFWQNI
EKEIMILLSSSHENYDIKAPIVNPNAGLVIVTGTHSQLQRVKAYLQKLESRLKKQVIIDVSILAVNLNKNHSSGINWQNF
NIGLNSQTSDNTNSFMQIQNGQGFVKNLGLRANLNFDSIVNFLSQSGKTSVLSNPKLMALNNQQAIISIGDTVNYQVKES
SKGTENGTTVSESYSNYSIFIGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVEN
NQTLILGGLISHNRSQNDNSVNFLSKIPILGSLFRSEDENSNITEIVFIITPSIVDNTHIPSLRELGFKYNE

Nucleotide

• Length: 1419 bp

>NTDB_id=749539 OH128_RS01680 WP_002779315.1 327478..328896(+) (ctsD) [Campylobacter coli strain CC20JX12]
ATGATAAGATTAATATTTATTAAAATTCTATTTTTTACCAATCTTATTTATGCCATGGAATGCCAAAAACGCTTATTTGA
TATAAATATCAATGAAGATCTAAGCATAGAAGAAAGCCTAAAAGAACTTGCTAGTTATTGCTCTTTTAGCGTGGTAATTA
AAGATACAATTGCTAAGGAAAAACTAAAAGCCATTCAAAGCAGTATCAATATCCACCAAATGAGTTTAGATGAAATTTTT
AAACTTTTTATAGAAGAACAGGACCTAGCTTATAAATTTGATGGCAAGATTTTAAAAATTTCTGCTTTGCAAACTAGAAT
TTTTAAAATCAACTATATTACTTCAGTTAGAGAAGGACAAAGCATAACCAAGGCTTCGGTGGATTCTAAGCCAAGGCAAA
GTGAGTATTATAGCGCTTTTGAAGATAATGAAGATAATATGATTAAAAGTATGGAAAAATTTGACTTTTGGCAAAATATA
GAAAAAGAGATTATGATTTTGCTTAGCTCCTCACATGAAAACTATGATATAAAAGCACCTATAGTCAATCCAAATGCTGG
GCTTGTTATCGTTACTGGAACGCATTCTCAGCTTCAACGCGTAAAAGCTTATTTACAAAAGCTTGAAAGTCGTCTTAAAA
AACAAGTTATTATAGATGTGAGTATACTTGCTGTAAATCTTAATAAAAATCATTCTAGTGGGATCAATTGGCAAAATTTC
AATATAGGATTAAATTCTCAAACAAGCGATAATACAAATTCTTTTATGCAAATACAAAATGGTCAAGGTTTTGTTAAAAA
TTTGGGTTTAAGAGCGAATTTGAATTTTGATTCCATTGTCAATTTTTTATCTCAAAGTGGAAAAACCAGTGTTTTATCTA
ATCCTAAATTAATGGCTTTAAACAATCAACAAGCCATTATTTCCATAGGCGATACTGTGAATTATCAAGTAAAAGAAAGC
TCTAAAGGTACTGAAAATGGCACAACTGTAAGTGAGAGTTATAGTAATTATTCTATTTTCATAGGAATTTTGCTTAATAT
TTTGCCCGAAATTTCTGATGATGGAAAAATCATGCTTAGGATCAATCCAAGTCTAAGCGACTTTAAATACCCAGAGGACA
ATAAAAGACAAAAAGAACCCCGCACTATCGCGCCTGATACAATTCAAAAAAAGCTTTCAAGTGTGGTGCAAGTAGAAAAT
AATCAAACTTTAATTTTGGGCGGACTTATCTCTCATAATCGCTCACAAAATGATAATTCTGTTAATTTTTTATCTAAAAT
TCCCATTTTGGGTTCTTTATTTAGAAGTGAAGATGAAAATTCCAATATCACAGAAATTGTTTTTATCATCACCCCAAGCA
TAGTAGATAATACACATATACCTAGTCTTAGGGAGTTAGGATTTAAGTACAATGAATAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (283-456)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	80.72	100	0.807