Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   FQS62_RS17615 Genome accession   NZ_CP109812
Coordinates   3806275..3807648 (+) Length   457 a.a.
NCBI ID   WP_049447478.1    Uniprot ID   A0AA42XQJ5
Organism   Stenotrophomonas sp. SBJS02     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3796924..3809992 3806275..3807648 within 0


Gene organization within MGE regions


Location: 3796924..3809992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQS62_RS17575 (FQS62_017575) - 3796924..3797598 (+) 675 WP_141097651.1 hypothetical protein -
  FQS62_RS17580 (FQS62_017580) - 3797592..3798605 (+) 1014 WP_049447473.1 hypothetical protein -
  FQS62_RS17585 (FQS62_017585) - 3798599..3799615 (+) 1017 WP_208042994.1 TraB/GumN family protein -
  FQS62_RS17590 (FQS62_017590) - 3799934..3800203 (+) 270 WP_049447475.1 hypothetical protein -
  FQS62_RS17595 (FQS62_017595) - 3800255..3802012 (+) 1758 WP_208042995.1 ABC transporter transmembrane domain-containing protein -
  FQS62_RS17600 (FQS62_017600) sucD 3802130..3803005 (-) 876 WP_017356169.1 succinate--CoA ligase subunit alpha -
  FQS62_RS17605 (FQS62_017605) sucC 3803026..3804195 (-) 1170 WP_208042996.1 ADP-forming succinate--CoA ligase subunit beta -
  FQS62_RS17610 (FQS62_017610) - 3804601..3806214 (+) 1614 WP_049447477.1 ATP-binding protein -
  FQS62_RS17615 (FQS62_017615) pilR 3806275..3807648 (+) 1374 WP_049447478.1 sigma-54 dependent transcriptional regulator Regulator
  FQS62_RS17620 (FQS62_017620) pilB 3807754..3809482 (-) 1729 Protein_3445 type IV-A pilus assembly ATPase PilB -
  FQS62_RS22305 - 3809576..3809992 (-) 417 WP_208043038.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49489.81 Da        Isoelectric Point: 6.3584

>NTDB_id=749531 FQS62_RS17615 WP_049447478.1 3806275..3807648(+) (pilR) [Stenotrophomonas sp. SBJS02]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNTERPVPGPAAEQGARLLGASPAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFIPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELRVPPLRERRQDLPE
LAAAVLARLARSHGRATPLLAPSALEALAQYAFPGNVRELENILERALALAEEDCIGADDLRLPQHAPRAPGSAAPAEAV
ADLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=749531 FQS62_RS17615 WP_049447478.1 3806275..3807648(+) (pilR) [Stenotrophomonas sp. SBJS02]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGATGAACGCGACATCCGCGAACTGCTGGTACTGACCCTCGGCCGCAT
GGGGCTGCGCATCAGTACTGCCGCCAACCTGGCCGAAGCACGCGAGTTGCTCGCCAGCAATCCGTACGATCTGTGCATCA
CCGACATGCGGCTGCCGGACGGCAACGGCATCGAGCTGGTCAGCGAGATCGCCCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCACTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
AGACATCTCGGTGCTGCGCGGCCTGGTCAAGCATGCGCTGGAACTCAACAACACCGAACGTCCCGTGCCCGGCCCTGCTG
CCGAACAAGGCGCACGCCTGCTGGGTGCTTCGCCGGCCATGGACGTGCTGCGCACCACCATCGGCAAGGTTGCGCGCAGC
CAGGCACCGGTCTACATCCTCGGTGAATCGGGCGTGGGCAAGGAACTGGTCGCGCGCACCATCCATGCCCAGGGCGCACG
TGCGGCCGGACCGTTCATACCGGTCAACTGCGGCGCCATTCCCGGCGAACTGATGGAGAGCGAGTTCTTCGGCCATCGCA
AGGGCAGCTTCAGCGGCGCCCATGCCGACAAGCCCGGCCTGTTCCAGGCTGCGCACGGCGGCACCCTGTTCCTGGACGAA
GTGGCCGAGCTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGAGCGGTCGGTGCGGC
CAATGAGGAGCCGGTGGACGTACGCATCCTCTCGGCCACCCACAAGGACCTGGCCGAGCTGGTCGAGGATGGGCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTGATCGAACTGAGGGTGCCGCCGCTGCGCGAGCGCCGCCAGGACCTGCCGGAA
CTGGCCGCCGCGGTACTGGCACGCCTGGCCCGCAGCCATGGCCGTGCTACCCCGCTGCTGGCGCCTTCGGCGCTGGAGGC
ACTGGCGCAGTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTGGAACGCGCGCTGGCCCTGGCCGAGGAAG
ACTGCATCGGCGCCGATGACCTGCGCCTGCCGCAACACGCGCCGCGTGCGCCGGGCAGTGCCGCGCCCGCCGAAGCCGTG
GCCGACCTGCAGCCCGGCAGCGCCGCCCTGCCCTCGTACATCGAGCAGCTGGAGCGCAGCGCCATCCAGCGCGCGCTGGA
AGAGAACCGCTGGAACAAGACTCGCACTGCTGCGCAGCTGGGGATTACCTTCCGCGCACTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(414-454)

Sigma-54 interaction domain (Sigma54_activat)

(141-306)

Response regulator receiver domain (Response_reg)

(8-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.377

99.781

0.632
  pilR Acinetobacter baumannii strain A118

48.596

100

0.492