Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   FOF60_RS21875 Genome accession   NZ_CP109811
Coordinates   4266922..4268268 (-) Length   448 a.a.
NCBI ID   WP_192470173.1    Uniprot ID   -
Organism   Mesobacillus jeotgali strain SBJS01     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4261922..4273268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOF60_RS21845 (FOF60_21845) flgL 4262474..4263364 (-) 891 WP_192469950.1 flagellar hook-associated protein FlgL -
  FOF60_RS21850 (FOF60_21850) flgK 4263374..4264939 (-) 1566 WP_192469949.1 flagellar hook-associated protein FlgK -
  FOF60_RS21855 (FOF60_21855) - 4264958..4265407 (-) 450 WP_192469948.1 flagellar protein FlgN -
  FOF60_RS21860 (FOF60_21860) flgM 4265422..4265685 (-) 264 WP_192469947.1 flagellar biosynthesis anti-sigma factor FlgM -
  FOF60_RS21865 (FOF60_21865) - 4265785..4266189 (-) 405 WP_192469946.1 TIGR03826 family flagellar region protein -
  FOF60_RS21870 (FOF60_21870) - 4266218..4266859 (-) 642 WP_413632781.1 ComF family protein -
  FOF60_RS21875 (FOF60_21875) comFA 4266922..4268268 (-) 1347 WP_192470173.1 DEAD/DEAH box helicase Machinery gene
  FOF60_RS21880 (FOF60_21880) - 4268652..4269491 (-) 840 WP_192469944.1 DegV family protein -
  FOF60_RS21885 (FOF60_21885) sda 4269918..4270079 (-) 162 WP_264647609.1 sporulation histidine kinase inhibitor Sda -
  FOF60_RS21890 (FOF60_21890) - 4270226..4270909 (-) 684 WP_192469943.1 response regulator -
  FOF60_RS21895 (FOF60_21895) - 4270991..4272133 (-) 1143 WP_192469942.1 sensor histidine kinase -
  FOF60_RS21900 (FOF60_21900) - 4272556..4273194 (+) 639 WP_192469941.1 YigZ family protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50528.49 Da        Isoelectric Point: 9.2297

>NTDB_id=749511 FOF60_RS21875 WP_192470173.1 4266922..4268268(-) (comFA) [Mesobacillus jeotgali strain SBJS01]
MLTGKQLLHEELPFSREEIQKHHESGYIVYRKGVNRDPLSCTRCGTTDPTWFAEFPCSRCGKVEFYCRKCLMMGRVSECT
PLISWAGPEPEFNRIAQPLHWDGKLSAGQKVASRQVAEAVENSSELLVWAVAGAGKTEVLFEGIAQAFSTGKRVCVATPR
TDVVLELAPRFKKVFPDIKIAALYGGSEDRYELAQLTIATSHQLLRFYRAFDVMIVDEVDAFPYSIDETLQYAVQQSKKL
KSSLIYLTATPKKQWQKECRLGKRDYVTIPARFHRHPLPVPQFVWSGNWEKHLSKGRLSTPIKKWVESRLANGKQALIFA
PKIAAMDKILTILRQLYPLIESVHAEDPDRKEKVIKFRNKEMPILLTTTILERGVTVANIDVAVIGTEDSIFTESALVQI
AGRAGRSAEYPTGDVTFFHYGKTEAMLSARSQITMMNKEGIKKGLIDV

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=749511 FOF60_RS21875 WP_192470173.1 4266922..4268268(-) (comFA) [Mesobacillus jeotgali strain SBJS01]
ATGCTGACTGGGAAACAGCTGCTGCATGAGGAATTGCCTTTTTCGAGAGAGGAAATTCAGAAACACCATGAAAGTGGATA
TATAGTATACCGCAAGGGAGTCAACCGAGATCCGCTTTCTTGCACAAGATGCGGTACAACTGATCCAACCTGGTTTGCAG
AATTCCCGTGTTCCCGTTGTGGGAAAGTAGAGTTCTATTGCCGCAAATGCTTGATGATGGGACGGGTGAGTGAGTGCACG
CCGCTTATTAGCTGGGCGGGGCCTGAACCAGAGTTTAATCGAATTGCCCAACCTCTTCATTGGGACGGGAAATTATCAGC
AGGACAGAAGGTTGCTTCCCGTCAGGTTGCGGAAGCTGTGGAAAACTCATCTGAGCTCCTTGTATGGGCGGTTGCTGGGG
CAGGTAAAACGGAAGTGTTATTTGAAGGGATTGCTCAGGCTTTCTCCACAGGCAAGCGGGTTTGTGTGGCTACGCCAAGG
ACGGATGTGGTTCTTGAGCTGGCACCTCGTTTTAAAAAAGTGTTCCCAGATATAAAAATCGCAGCTCTTTATGGCGGCAG
TGAAGACCGCTACGAATTAGCTCAGCTTACTATCGCGACATCGCATCAATTGCTCCGCTTTTACAGGGCGTTCGACGTAA
TGATTGTCGATGAGGTGGATGCCTTCCCTTATTCCATTGACGAAACTCTTCAATATGCAGTCCAGCAATCAAAGAAGCTA
AAATCCTCGTTGATATATTTAACTGCCACCCCTAAAAAACAATGGCAGAAAGAGTGCCGTCTTGGGAAAAGAGATTATGT
CACGATTCCTGCCCGCTTCCACCGCCATCCTCTGCCGGTGCCACAGTTTGTGTGGTCGGGAAACTGGGAGAAACACCTTA
GTAAGGGAAGGTTGTCTACTCCAATAAAAAAATGGGTGGAATCTAGATTAGCCAACGGAAAACAAGCATTGATTTTTGCT
CCGAAAATCGCCGCCATGGACAAAATCCTCACCATCCTTCGACAATTGTATCCTCTTATTGAATCGGTCCATGCTGAAGA
TCCTGATAGAAAAGAAAAAGTAATAAAGTTCCGAAATAAAGAGATGCCCATATTGCTTACCACAACTATTCTTGAACGCG
GTGTTACGGTAGCGAATATTGATGTTGCTGTCATTGGCACGGAGGACAGTATTTTTACAGAGAGTGCTCTTGTGCAGATT
GCCGGCCGGGCAGGAAGAAGTGCAGAATATCCAACAGGCGATGTGACATTTTTTCATTATGGCAAAACAGAAGCAATGCT
CAGTGCCCGCAGCCAAATTACGATGATGAACAAAGAGGGGATCAAGAAGGGATTGATTGATGTATGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(311-407)

Type III restriction enzyme, res subunit (ResIII)

(104-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

50.893

100

0.509
  comFA/cflA Streptococcus pneumoniae Rx1

40.741

90.402

0.368
  comFA/cflA Streptococcus pneumoniae D39

40.741

90.402

0.368
  comFA/cflA Streptococcus pneumoniae R6

40.741

90.402

0.368
  comFA/cflA Streptococcus pneumoniae TIGR4

40.494

90.402

0.366
  comFA/cflA Streptococcus mitis NCTC 12261

40.247

90.402

0.364