Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QBL21_RS33720 Genome accession   NZ_CP123230
Coordinates   7897595..7898194 (-) Length   199 a.a.
NCBI ID   WP_407566009.1    Uniprot ID   -
Organism   Streptomyces sp. 184     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7892595..7903194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBL21_RS33700 (QBL21_33685) - 7892814..7893890 (-) 1077 WP_407566006.1 hypothetical protein -
  QBL21_RS33705 (QBL21_33690) - 7894340..7894903 (-) 564 WP_407566652.1 SigE family RNA polymerase sigma factor -
  QBL21_RS33710 (QBL21_33695) - 7895224..7896495 (-) 1272 WP_407566007.1 aspartate kinase -
  QBL21_RS33715 (QBL21_33700) - 7896825..7897487 (-) 663 WP_407566008.1 DUF5063 domain-containing protein -
  QBL21_RS33720 (QBL21_33705) recR 7897595..7898194 (-) 600 WP_407566009.1 recombination mediator RecR Machinery gene
  QBL21_RS33725 (QBL21_33710) - 7898371..7898706 (-) 336 WP_027741379.1 YbaB/EbfC family nucleoid-associated protein -
  QBL21_RS33730 (QBL21_33715) - 7898923..7901265 (-) 2343 WP_407566010.1 DNA polymerase III subunit gamma and tau -
  QBL21_RS33745 - 7901561..7901992 (-) 432 WP_407566011.1 tyrosine-type recombinase/integrase -
  QBL21_RS33750 - 7902246..7902440 (-) 195 WP_407566012.1 hypothetical protein -
  QBL21_RS33755 (QBL21_33735) - 7902786..7902911 (-) 126 WP_407566013.1 hypothetical protein -
  QBL21_RS33760 (QBL21_33740) - 7902905..7903117 (-) 213 WP_407566014.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21720.03 Da        Isoelectric Point: 5.1740

>NTDB_id=749415 QBL21_RS33720 WP_407566009.1 7897595..7898194(-) (recR) [Streptomyces sp. 184]
MYEGVVQELIDELGRLPGVGPKSAQRIAFHILQAEPADVRRLAHALTEVKEKVRFCAVCGNVAQEEHCRICADPRRDPAI
LCVVEEPKDVVAVERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGAVTELILATDPNLEGEATATYLARMVK
AMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=749415 QBL21_RS33720 WP_407566009.1 7897595..7898194(-) (recR) [Streptomyces sp. 184]
GTGTACGAAGGCGTGGTCCAGGAGCTGATCGACGAATTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGCAT
CGCCTTCCACATCCTCCAGGCCGAGCCCGCCGACGTCCGCCGGCTGGCGCATGCGCTGACCGAAGTGAAGGAGAAGGTCC
GGTTCTGTGCGGTCTGCGGGAACGTCGCGCAGGAGGAGCACTGCCGGATCTGCGCCGACCCGCGGCGCGACCCCGCCATC
CTGTGCGTCGTCGAGGAGCCGAAGGACGTCGTGGCCGTCGAGCGGACCCGTGAGTTCCGCGGGCGGTACCACGTGCTCGG
CGGCGCGATCAGCCCCATCGAGGGCGTCGGCCCGGACGACCTGCGGATTCGGGAGCTGCTCGCCCGGCTCGCGGACGGCG
CCGTCACGGAGCTGATCCTCGCCACCGACCCCAACCTCGAGGGCGAGGCCACGGCCACGTACCTGGCCCGTATGGTCAAG
GCCATGGGGCTGAAGGTGACCCGGCTGGCCAGCGGTCTGCCCGTGGGGGGCGATCTGGAGTACGCGGACGAGGTCACCCT
CGGCCGTGCCTTCGAAGGCAGGCGGTTGCTCGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.082

98.492

0.533
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

45.876

97.487

0.447