Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   AZSP09_RS11280 Genome accession   NZ_AP021844
Coordinates   2413663..2414025 (-) Length   120 a.a.
NCBI ID   WP_172974747.1    Uniprot ID   -
Organism   Azospira sp. I09     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2408663..2419025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AZSP09_RS11265 (AZSP09_22220) - 2410474..2412672 (-) 2199 WP_014235768.1 methyl-accepting chemotaxis protein -
  AZSP09_RS11270 (AZSP09_22230) - 2412752..2413264 (-) 513 WP_014235769.1 chemotaxis protein CheW -
  AZSP09_RS11275 (AZSP09_22240) - 2413279..2413641 (-) 363 WP_014235770.1 response regulator -
  AZSP09_RS11280 (AZSP09_22250) pilG 2413663..2414025 (-) 363 WP_172974747.1 response regulator Regulator
  AZSP09_RS11285 (AZSP09_22260) - 2414152..2414304 (-) 153 WP_043797679.1 rubredoxin -
  AZSP09_RS11290 (AZSP09_22270) thiD 2414444..2415286 (+) 843 WP_014235773.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  AZSP09_RS11295 (AZSP09_22280) thiE 2415279..2415929 (+) 651 WP_152090091.1 thiamine phosphate synthase -
  AZSP09_RS11300 (AZSP09_22290) hemL 2415916..2417199 (+) 1284 WP_014235775.1 glutamate-1-semialdehyde 2,1-aminomutase -
  AZSP09_RS11305 (AZSP09_22300) - 2417343..2417699 (+) 357 WP_152090092.1 DUF805 domain-containing protein -
  AZSP09_RS11310 (AZSP09_22310) ppk2 2417772..2418971 (-) 1200 WP_152090093.1 polyphosphate kinase 2 -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13371.43 Da        Isoelectric Point: 6.9223

>NTDB_id=74936 AZSP09_RS11280 WP_172974747.1 2413663..2414025(-) (pilG) [Azospira sp. I09]
MVIDDSNTIRRSAEIFLVQAGCQVVLAEDGFDALAKIADHQPDIVFCDIMMPRLDGYQTCALIKKNARFRNTPVIMLSSK
DGLFDRARGRMVGSDQYLTKPFTKDSLLQAVATYGPQQVQ

Nucleotide


Download         Length: 363 bp        

>NTDB_id=74936 AZSP09_RS11280 WP_172974747.1 2413663..2414025(-) (pilG) [Azospira sp. I09]
ATGGTGATTGACGATAGCAATACCATCCGTCGCAGCGCTGAAATCTTCCTGGTGCAGGCAGGATGCCAGGTGGTGCTGGC
CGAGGACGGGTTCGATGCCCTGGCCAAGATCGCCGACCACCAACCAGACATAGTCTTCTGCGACATCATGATGCCCCGTC
TGGACGGTTACCAGACCTGCGCCCTGATCAAGAAAAACGCCCGTTTCCGCAACACCCCGGTGATCATGCTGTCCTCCAAG
GACGGCCTTTTCGACCGGGCCCGGGGGCGTATGGTCGGTTCCGACCAGTACCTCACCAAGCCCTTTACCAAAGACAGTTT
GCTGCAGGCTGTGGCCACCTACGGGCCCCAGCAGGTTCAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(1-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

69.298

95

0.658
  pilH Synechocystis sp. PCC 6803

40.541

92.5

0.375

Multiple sequence alignment