Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   L0P93_RS17440 Genome accession   NZ_CP109795
Coordinates   3397955..3398095 (-) Length   46 a.a.
NCBI ID   WP_003152043.1    Uniprot ID   A3KLB4
Organism   Bacillus velezensis strain B19     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3392955..3403095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0P93_RS17415 (L0P93_17420) - 3393308..3393691 (-) 384 WP_277160979.1 hotdog fold thioesterase -
  L0P93_RS17420 (L0P93_17425) comA 3393713..3394357 (-) 645 WP_014418762.1 response regulator transcription factor Regulator
  L0P93_RS17425 (L0P93_17430) - 3394438..3396716 (-) 2279 Protein_3359 histidine kinase -
  L0P93_RS17430 (L0P93_17435) comX 3396728..3396892 (-) 165 WP_007613432.1 competence pheromone ComX -
  L0P93_RS17435 (L0P93_17440) - 3396892..3397770 (-) 879 WP_032860494.1 polyprenyl synthetase family protein -
  L0P93_RS17440 (L0P93_17445) degQ 3397955..3398095 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  L0P93_RS17445 (L0P93_17450) - 3398561..3398902 (+) 342 WP_014418765.1 hypothetical protein -
  L0P93_RS17450 (L0P93_17455) - 3398920..3400131 (-) 1212 WP_277160980.1 EAL and HDOD domain-containing protein -
  L0P93_RS17455 (L0P93_17460) - 3400261..3401727 (-) 1467 WP_014418767.1 nicotinate phosphoribosyltransferase -
  L0P93_RS17460 (L0P93_17465) - 3401745..3402296 (-) 552 WP_154817914.1 isochorismatase family cysteine hydrolase -
  L0P93_RS17465 (L0P93_17470) - 3402393..3402791 (-) 399 WP_029973800.1 DUF1694 domain-containing protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5518.30 Da        Isoelectric Point: 4.9432

>NTDB_id=749266 L0P93_RS17440 WP_003152043.1 3397955..3398095(-) (degQ) [Bacillus velezensis strain B19]
MENKLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=749266 L0P93_RS17440 WP_003152043.1 3397955..3398095(-) (degQ) [Bacillus velezensis strain B19]
GTGGAAAACAAATTAGAAGAAGTAAAGCAATTATTATTCCGACTTGAAAATGATATCAGAGAAACAACCGACTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATTCTCATATGCAATGAAAATTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

89.13

100

0.891