Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   L0P93_RS17420 Genome accession   NZ_CP109795
Coordinates   3393713..3394357 (-) Length   214 a.a.
NCBI ID   WP_014418762.1    Uniprot ID   A0A2Z4EIP2
Organism   Bacillus velezensis strain B19     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3388713..3399357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0P93_RS17385 (L0P93_17390) - 3389904..3390335 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  L0P93_RS17390 (L0P93_17395) - 3390335..3390673 (+) 339 WP_277160977.1 Na(+)/H(+) antiporter subunit C -
  L0P93_RS17395 (L0P93_17400) - 3390666..3392144 (+) 1479 WP_277160978.1 Na+/H+ antiporter subunit D -
  L0P93_RS17400 (L0P93_17405) - 3392150..3392626 (+) 477 WP_017419419.1 Na+/H+ antiporter subunit E -
  L0P93_RS17405 (L0P93_17410) - 3392626..3392910 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  L0P93_RS17410 (L0P93_17415) mnhG 3392894..3393268 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  L0P93_RS17415 (L0P93_17420) - 3393308..3393691 (-) 384 WP_277160979.1 hotdog fold thioesterase -
  L0P93_RS17420 (L0P93_17425) comA 3393713..3394357 (-) 645 WP_014418762.1 response regulator transcription factor Regulator
  L0P93_RS17425 (L0P93_17430) - 3394438..3396716 (-) 2279 Protein_3359 histidine kinase -
  L0P93_RS17430 (L0P93_17435) comX 3396728..3396892 (-) 165 WP_007613432.1 competence pheromone ComX -
  L0P93_RS17435 (L0P93_17440) - 3396892..3397770 (-) 879 WP_032860494.1 polyprenyl synthetase family protein -
  L0P93_RS17440 (L0P93_17445) degQ 3397955..3398095 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  L0P93_RS17445 (L0P93_17450) - 3398561..3398902 (+) 342 WP_014418765.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24302.70 Da        Isoelectric Point: 4.9953

>NTDB_id=749265 L0P93_RS17420 WP_014418762.1 3393713..3394357(-) (comA) [Bacillus velezensis strain B19]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTQRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=749265 L0P93_RS17420 WP_014418762.1 3393713..3394357(-) (comA) [Bacillus velezensis strain B19]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACAGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4EIP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86