Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   L0P93_RS02350 Genome accession   NZ_CP109795
Coordinates   440538..441686 (+) Length   382 a.a.
NCBI ID   WP_014304340.1    Uniprot ID   I2C1C2
Organism   Bacillus velezensis strain B19     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 435538..446686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0P93_RS02330 (L0P93_02330) - 435938..436621 (-) 684 WP_014416899.1 ABC transporter ATP-binding protein -
  L0P93_RS02335 (L0P93_02335) - 436636..438069 (-) 1434 WP_277161140.1 ABC transporter permease -
  L0P93_RS02340 (L0P93_02340) - 438282..438965 (+) 684 WP_014416901.1 response regulator transcription factor -
  L0P93_RS02345 (L0P93_02345) - 438952..440379 (+) 1428 WP_088056326.1 HAMP domain-containing sensor histidine kinase -
  L0P93_RS02350 (L0P93_02350) rapC 440538..441686 (+) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  L0P93_RS02355 (L0P93_02355) phrC 441670..441789 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  L0P93_RS02360 (L0P93_02360) - 441940..442035 (-) 96 WP_021495118.1 YjcZ family sporulation protein -
  L0P93_RS02365 (L0P93_02365) - 442130..443494 (-) 1365 WP_095273131.1 aspartate kinase -
  L0P93_RS02370 (L0P93_02370) ceuB 443908..444861 (+) 954 WP_015239156.1 ABC transporter permease Machinery gene
  L0P93_RS02375 (L0P93_02375) - 444851..445798 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  L0P93_RS02380 (L0P93_02380) - 445792..446550 (+) 759 WP_012116804.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45494.75 Da        Isoelectric Point: 4.9939

>NTDB_id=749215 L0P93_RS02350 WP_014304340.1 440538..441686(+) (rapC) [Bacillus velezensis strain B19]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=749215 L0P93_RS02350 WP_014304340.1 440538..441686(+) (rapC) [Bacillus velezensis strain B19]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAAGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCATGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATATACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAAGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

Tetratricopeptide repeat (TPR_12)

(223-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C1C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

82.199

100

0.822
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568