Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   OBG92_RS27705 Genome accession   NZ_CP109657
Coordinates   5884742..5886886 (-) Length   714 a.a.
NCBI ID   WP_264315654.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Zw26     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5879742..5891886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OBG92_RS27690 (OBG92_05452) - 5881403..5883049 (-) 1647 WP_053814715.1 AAA family ATPase -
  OBG92_RS27695 (OBG92_05453) aroB 5883056..5884162 (-) 1107 WP_012077719.1 3-dehydroquinate synthase -
  OBG92_RS27700 (OBG92_05454) aroK 5884212..5884730 (-) 519 WP_003148769.1 shikimate kinase AroK -
  OBG92_RS27705 (OBG92_05455) pilQ 5884742..5886886 (-) 2145 WP_264315654.1 type 4a pilus secretin PilQ Machinery gene
  OBG92_RS27710 (OBG92_05456) pilP 5886940..5887464 (-) 525 WP_034082521.1 type 4a pilus biogenesis lipoprotein PilP -
  OBG92_RS27715 (OBG92_05457) pilO 5887461..5888084 (-) 624 WP_003148775.1 type 4a pilus biogenesis protein PilO -
  OBG92_RS27720 (OBG92_05458) pilN 5888081..5888677 (-) 597 WP_003148777.1 type 4a pilus biogenesis protein PilN -
  OBG92_RS27725 (OBG92_05459) pilM 5888677..5889741 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 714 a.a.        Molecular weight: 77401.08 Da        Isoelectric Point: 5.3173

>NTDB_id=748824 OBG92_RS27705 WP_264315654.1 5884742..5886886(-) (pilQ) [Pseudomonas aeruginosa strain Zw26]
MNSGLSRLGIALLAAMFAPALLAADLEKLDVAALPGDRVELKLQFDQPVATPRGYTIEQPARIALDLPGVQNKLGTKNRE
LSVGNTRSVTVVEAKDRTRLIINLTTLSSYTTRVEGNNLFVVVGNSPAGASVASAAPVKASPAPASYAQPIKPKPYVPAG
RAIRNIDFQRGEKGEGNVVIDLSDPTLSPDIQEQGGKIRLDFAKTQLPDALRVRLDVKDFATPVQFVNASAQSDRTSITI
EPSGLYDYLVYQTDNRLTVSIKPMTADDAERRKKDNFAYTGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVQGNITL
RLQNVPWDQALDLVLKTKGLDKRKLGNVLLVAPADEIAARERQELEAQKQIAELAPLRRELIQVNYAKAADIAKLFQSVT
SEGGAEGKEGGRGSITVDDRTNSIIAYQPQDRLDELRRIVSQLDIPVRQVMIEARIVEANVGYDKSLGVRWGGAYHKGNW
NAYGKDGNMGIKDEEGLNCGPIAGNCSFPTVGTNKSPSPFVDIGAKDATSGIGIGFITDNIILDLQLSAMEKTGNGEIIS
QPKVVTSDKETAKILKGSEVPYQEASSSGATSTSFKEAALSLEVTPQITPDNRIIVEVKVTKDAPDYQNMLNGVLPINKN
EVNAKILVSDGETIVIGGVFSNEQTKAVDKVPFLGDLPYLGRLFRRDTVVDRKNELLVFLTPRIMNNQAIAIGR

Nucleotide


Download         Length: 2145 bp        

>NTDB_id=748824 OBG92_RS27705 WP_264315654.1 5884742..5886886(-) (pilQ) [Pseudomonas aeruginosa strain Zw26]
ATGAACAGTGGCCTCTCGCGCCTCGGGATCGCTTTGCTGGCCGCCATGTTCGCGCCGGCCTTGCTCGCCGCGGACCTGGA
GAAACTCGACGTGGCGGCGCTGCCCGGAGACCGGGTCGAGCTCAAGCTGCAGTTCGACCAGCCCGTCGCCACGCCGCGCG
GCTATACCATCGAGCAGCCGGCGCGGATCGCCCTCGACCTGCCGGGGGTGCAGAACAAGCTCGGCACCAAGAACCGCGAA
CTGAGCGTGGGCAATACACGCAGCGTCACGGTGGTCGAGGCGAAGGACCGCACACGGCTGATCATCAACCTGACCACGCT
GTCGTCCTACACCACCCGGGTGGAGGGCAACAACCTGTTCGTGGTGGTCGGCAATTCGCCGGCCGGCGCCAGCGTCGCTT
CCGCCGCTCCGGTCAAGGCGAGCCCGGCTCCGGCCAGCTACGCCCAGCCGATCAAGCCCAAGCCGTACGTGCCGGCGGGC
CGCGCGATCCGCAATATCGACTTCCAGCGCGGCGAGAAGGGCGAGGGCAACGTGGTCATCGACCTCTCCGACCCGACGCT
GAGCCCGGATATCCAGGAGCAGGGCGGCAAGATCCGCCTGGACTTCGCCAAGACCCAGCTGCCCGACGCGCTGCGGGTTC
GCCTGGACGTCAAGGACTTCGCCACCCCGGTGCAGTTCGTCAACGCCAGTGCGCAATCCGACCGTACCAGCATCACCATC
GAGCCGAGCGGGCTCTACGACTACCTGGTCTACCAGACCGACAATCGCCTGACCGTCAGCATCAAGCCGATGACCGCGGA
CGACGCCGAGCGGCGCAAGAAGGACAACTTCGCCTACACCGGCGAGAAGCTGTCGCTGAACTTCCAGGACATCGACGTGC
GGTCGGTGCTGCAATTGATCGCCGACTTCACCGATCTGAACCTGGTGGCCTCGGATACCGTGCAGGGCAACATCACCCTG
CGCCTGCAGAATGTGCCGTGGGACCAGGCGCTGGACCTCGTGCTCAAGACCAAGGGCCTGGACAAGCGCAAGCTCGGCAA
CGTGCTGCTGGTGGCGCCGGCCGACGAGATCGCTGCACGCGAGCGTCAGGAGCTGGAAGCGCAGAAGCAGATCGCCGAAC
TGGCGCCGCTGCGTCGCGAGCTGATCCAGGTGAACTACGCCAAGGCGGCGGACATCGCCAAGCTGTTCCAGTCGGTGACC
AGCGAGGGCGGTGCGGAAGGCAAGGAAGGCGGGCGCGGCTCGATCACCGTGGACGACCGCACCAACAGCATCATCGCCTA
CCAGCCGCAAGATCGCCTGGATGAGCTGCGGCGGATCGTTTCGCAACTGGACATCCCGGTACGCCAGGTGATGATCGAGG
CGCGCATCGTCGAAGCCAACGTCGGCTACGACAAGAGCCTCGGCGTGCGCTGGGGCGGTGCCTACCACAAGGGCAACTGG
AATGCCTACGGCAAGGACGGCAACATGGGGATCAAGGACGAGGAAGGCCTGAACTGCGGTCCCATCGCCGGCAACTGTAG
CTTCCCCACCGTGGGCACCAACAAGTCGCCGTCGCCGTTCGTCGATATTGGCGCGAAGGATGCCACTTCCGGGATCGGTA
TCGGCTTCATCACCGACAACATCATCCTCGACCTGCAATTGTCGGCGATGGAAAAGACCGGCAACGGTGAAATCATTTCC
CAGCCGAAGGTGGTCACTTCCGACAAGGAAACCGCGAAGATCCTCAAAGGCTCCGAGGTTCCCTATCAGGAGGCCAGTTC
CAGCGGCGCCACCAGTACCTCCTTCAAGGAGGCTGCGCTGTCCCTCGAAGTGACCCCGCAGATCACGCCGGACAACCGGA
TCATCGTCGAGGTCAAGGTCACCAAGGATGCGCCGGACTACCAGAACATGCTGAATGGCGTACTGCCGATCAACAAGAAC
GAGGTCAACGCCAAGATCCTGGTCAGCGATGGCGAAACCATCGTCATCGGCGGGGTGTTCAGCAACGAGCAGACCAAGGC
GGTGGACAAGGTGCCGTTCCTCGGCGACCTGCCCTACCTGGGCCGCCTGTTCCGGCGTGACACGGTGGTCGACAGGAAAA
ACGAACTTCTGGTTTTCCTGACACCGCGGATCATGAATAATCAGGCCATCGCAATCGGTCGCTGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(307-353)

AMIN domain (AMIN)

(38-122)

Bacterial type II/III secretion system short domain (Secretin_N)

(381-449)

Bacterial type II and III secretion system protein (Secretin)

(549-705)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

96.359

100

0.964
  pilQ Acinetobacter baumannii strain A118

40.417

100

0.408
  pilQ Acinetobacter baumannii D1279779

40.417

100

0.408
  comQ Acinetobacter baylyi ADP1

40.642

100

0.408
  pilQ Legionella pneumophila strain Lp02

37.374

97.059

0.363
  pilQ Legionella pneumophila strain ERS1305867

37.374

97.059

0.363