Detailed information NTG0748818

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OBG92_RS24695
• Genome accession: NZ_CP109657
• Coordinates: 5234358..5235230 (+)
• Length: 290 a.a.
• NCBI ID: WP_264315596.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain Zw26
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5229358..5240230

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OBG92_RS24675 (OBG92_04859)	-	5230741..5231208 (-)	468	WP_034081326.1	pilin	-
OBG92_RS24685 (OBG92_04860)	pilB	5231431..5233134 (+)	1704	WP_033998207.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OBG92_RS24690 (OBG92_04861)	pilC	5233138..5234355 (+)	1218	WP_034081324.1	type II secretion system F family protein	Machinery gene
OBG92_RS24695 (OBG92_04862)	pilD	5234358..5235230 (+)	873	WP_264315596.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
OBG92_RS24700 (OBG92_04863)	coaE	5235227..5235838 (+)	612	WP_003152767.1	dephospho-CoA kinase	-
OBG92_RS24705 (OBG92_04864)	yacG	5235835..5236035 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
OBG92_RS24710 (OBG92_04865)	-	5236073..5236282 (-)	210	WP_033998211.1	hypothetical protein	-
OBG92_RS24715 (OBG92_04866)	-	5236388..5237077 (-)	690	WP_012077298.1	energy-coupling factor ABC transporter permease	-
OBG92_RS24720 (OBG92_04867)	-	5237074..5237544 (-)	471	WP_079385052.1	FAD/FMN-containing dehydrogenase	-
OBG92_RS24725 (OBG92_04868)	-	5237541..5237966 (-)	426	WP_003152776.1	GNAT family N-acetyltransferase	-
OBG92_RS24730 (OBG92_04869)	-	5238098..5238727 (+)	630	WP_033998217.1	DUF1780 domain-containing protein	-
OBG92_RS24735 (OBG92_04870)	-	5238724..5239164 (+)	441	WP_012077299.1	MOSC domain-containing protein	-
OBG92_RS24740 (OBG92_04871)	-	5239199..5239369 (+)	171	WP_264315597.1	DUF3094 domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31707.71 Da
• Isoelectric Point: 8.0434

>NTDB_id=748818 OBG92_RS24695 WP_264315596.1 5234358..5235230(+) (pilD) [Pseudomonas aeruginosa strain Zw26]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPVLSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSLVG
AILGAIVLRLRNAASGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=748818 OBG92_RS24695 WP_264315596.1 5234358..5235230(+) (pilD) [Pseudomonas aeruginosa strain Zw26]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGT
CCCTGGGAAAACATCCCGGTGCTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAGCTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGACGCGCTGTTCGGCGCGGT
GTTCGGCTACCTCAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGCGCCTGGGGCGGCTGGCAGGTCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCCATCCTCGGGGCGATCGTGCTGCGCCTGCGCAACGCCGCAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCATTGCTCTGGGGTGATCAAATAACCCGGACCTATTTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.357	97.586	0.521
pilD	Acinetobacter baumannii D1279779	50.883	97.586	0.497
pilD	Acinetobacter nosocomialis M2	50.177	97.586	0.49
pilD	Neisseria gonorrhoeae MS11	50.36	95.862	0.483