Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   QAO39_RS13085 Genome accession   NZ_CP123158
Coordinates   2636007..2637119 (-) Length   370 a.a.
NCBI ID   WP_268558126.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BE-MSSA9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2631007..2642119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO39_RS13075 (QAO39_13065) gyrA 2631363..2634026 (-) 2664 WP_165468871.1 DNA gyrase subunit A -
  QAO39_RS13080 (QAO39_13070) gyrB 2634063..2635997 (-) 1935 WP_000255578.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  QAO39_RS13085 (QAO39_13075) recF 2636007..2637119 (-) 1113 WP_268558126.1 DNA replication/repair protein RecF Machinery gene
  QAO39_RS13090 (QAO39_13080) yaaA 2637116..2637361 (-) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  QAO39_RS13095 (QAO39_13085) dnaN 2637742..2638875 (-) 1134 WP_000969811.1 DNA polymerase III subunit beta -
  QAO39_RS13100 (QAO39_13090) dnaA 2639153..2640514 (-) 1362 WP_001290433.1 chromosomal replication initiator protein DnaA -
  QAO39_RS13105 (QAO39_13095) rpmH 2641245..2641382 (+) 138 WP_000240855.1 50S ribosomal protein L34 -
  QAO39_RS13110 (QAO39_13100) rnpA 2641503..2641856 (+) 354 WP_001789343.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42443.49 Da        Isoelectric Point: 6.4362

>NTDB_id=748809 QAO39_RS13085 WP_268558126.1 2636007..2637119(-) (recF) [Staphylococcus aureus strain BE-MSSA9]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYVMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAAR
LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=748809 QAO39_RS13085 WP_268558126.1 2636007..2637119(-) (recF) [Staphylococcus aureus strain BE-MSSA9]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGTACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGTAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTGTCGCTGAATTATTTACCTAGTCTTAAATTTGATTATGCTCAAAATGAAGCGGCACGA
CTTGAAGAAATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.378

100

0.584
  recF Streptococcus pneumoniae R6

49.33

100

0.497