Detailed information NTG0748789

Bioinformatically predicted

Overview

• Name: ctsF
• Type: Machinery gene
• Locus tag: OKF33_RS07370
• Genome accession: NZ_CP109654
• Coordinates: 1423012..1424187 (-)
• Length: 391 a.a.
• NCBI ID: WP_002781160.1
• Uniprot ID: A0A0Q2ISE7
• Organism: Campylobacter coli strain 10-02932
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1418012..1429187

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OKF33_RS07340	-	1418554..1418895 (+)	342	WP_002784057.1	hypothetical protein	-
OKF33_RS07345	flgM	1418958..1419155 (+)	198	WP_002779262.1	flagellar biosynthesis anti-sigma factor FlgM	-
OKF33_RS07350	-	1419197..1419631 (+)	435	WP_002779263.1	flagellar protein FlgN	-
OKF33_RS07355	flgK	1419641..1421467 (+)	1827	WP_264306060.1	flagellar hook-associated protein FlgK	-
OKF33_RS07360	-	1421484..1422248 (+)	765	WP_002781156.1	TIGR02757 family protein	-
OKF33_RS07365	-	1422251..1423015 (+)	765	WP_002784060.1	TSUP family transporter	-
OKF33_RS07370	ctsF	1423012..1424187 (-)	1176	WP_002781160.1	type II secretion system F family protein	Machinery gene
OKF33_RS07375	ctsE	1424174..1425736 (-)	1563	WP_002779312.1	GspE/PulE family protein	Machinery gene
OKF33_RS07380	-	1425729..1426325 (-)	597	WP_002779313.1	CDC27 family protein	-
OKF33_RS07385	ctsP	1426322..1426918 (-)	597	WP_002779314.1	ATP-binding protein	Machinery gene
OKF33_RS07390	ctsD	1426911..1428329 (-)	1419	WP_002779315.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
OKF33_RS07395	ctsR	1428307..1428618 (-)	312	WP_002795361.1	hypothetical protein	Machinery gene

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 45518.35 Da
• Isoelectric Point: 9.4461

>NTDB_id=748789 OKF33_RS07370 WP_002781160.1 1423012..1424187(-) (ctsF) [Campylobacter coli strain 10-02932]
MKLYELEIKGKTKQTKHLRAKNLNEAQAKAIAKKWEILNIKEIQKASFKRLDDARFILFFQELSLLCEVGISIKDALKEL
DKIYSHKMIAKLCDNLNLGQNLSLAFENANFGLTHAELALIKTSQNTGKLSEIFMQISRLRQNNVENEQRVKKALRYPLI
VFLSVCAAFVLLMLFVVPNFKDLFEDLNLALPFITELIIYIYNFLDKYILLVFCLIALILFLTLFLYRKYYFFSYFCDSL
LLKLPLLSKFIIYQQNYSFFMIFSLLLKSGISLLEAFKLATLALNNKKVLLYYQEIRTFMDSGLEISHAFKKVDLFDPLV
FSMLSIAMKSSKLEFLSEEIAKYYKNKSENLMDKFLSFLEPIMTLWVAILVLFLALGIFLPIWELSSGVNF

Nucleotide

• Length: 1176 bp

>NTDB_id=748789 OKF33_RS07370 WP_002781160.1 1423012..1424187(-) (ctsF) [Campylobacter coli strain 10-02932]
ATGAAGCTTTATGAGCTCGAGATTAAAGGCAAAACAAAACAGACAAAGCATTTAAGGGCTAAAAATTTAAACGAAGCTCA
AGCAAAAGCTATCGCTAAAAAATGGGAAATTTTAAATATCAAAGAGATACAAAAAGCAAGTTTTAAAAGATTAGATGATG
CAAGATTTATCCTTTTCTTTCAAGAATTATCTTTGCTTTGCGAAGTAGGAATCAGCATAAAAGATGCTTTAAAGGAGCTT
GATAAAATATATTCTCACAAGATGATTGCCAAGCTTTGCGATAATTTAAATTTAGGACAAAATTTAAGCCTTGCTTTTGA
AAATGCAAATTTTGGGCTTACTCATGCGGAATTAGCCCTTATTAAAACTTCCCAAAACACAGGAAAATTAAGTGAAATTT
TCATGCAAATTTCAAGATTAAGACAAAATAATGTAGAAAATGAACAAAGAGTCAAAAAAGCTTTAAGATATCCTTTGATT
GTTTTTTTAAGTGTGTGCGCGGCTTTTGTTTTACTCATGCTTTTTGTTGTGCCTAATTTTAAAGATTTATTTGAGGATTT
AAATTTAGCCTTACCCTTTATAACCGAGCTTATAATTTATATTTATAATTTTTTGGATAAGTATATTTTGCTTGTGTTTT
GTTTGATCGCACTTATTTTATTTCTTACTTTATTTTTGTATAGAAAATATTATTTCTTTTCATATTTTTGCGATAGCTTG
CTTTTAAAACTTCCTTTGTTGTCTAAATTTATTATTTATCAGCAAAATTATTCTTTTTTTATGATTTTCTCTTTACTTTT
AAAAAGCGGCATTTCTCTTTTGGAAGCTTTTAAATTAGCCACTTTGGCCTTAAATAATAAAAAGGTATTATTGTATTATC
AAGAAATTAGAACATTTATGGATTCTGGCCTTGAAATAAGTCACGCCTTTAAAAAAGTAGATCTTTTTGATCCTTTGGTT
TTTTCTATGTTGAGTATAGCTATGAAAAGTTCTAAGCTTGAGTTTTTGAGCGAGGAGATTGCGAAATATTATAAAAACAA
AAGTGAAAATTTAATGGACAAGTTTTTAAGCTTTTTAGAACCTATAATGACTTTATGGGTTGCGATTTTAGTATTGTTTT
TAGCACTTGGAATTTTTTTACCTATATGGGAACTTAGCTCAGGAGTAAATTTTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (262-381)

• Type II secretion system (T2SS), protein F (T2SSF) (59-178)

3D structure

• AlphaFold DB: A0A0Q2ISE7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsF	Campylobacter jejuni subsp. jejuni 81-176	60.66	100	0.611