Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   OKF33_RS07395 Genome accession   NZ_CP109654
Coordinates   1428307..1428618 (-) Length   103 a.a.
NCBI ID   WP_002795361.1    Uniprot ID   A0A5T1JQB7
Organism   Campylobacter coli strain 10-02932     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1423307..1433618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKF33_RS07375 ctsE 1424174..1425736 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  OKF33_RS07380 - 1425729..1426325 (-) 597 WP_002779313.1 CDC27 family protein -
  OKF33_RS07385 ctsP 1426322..1426918 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  OKF33_RS07390 ctsD 1426911..1428329 (-) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  OKF33_RS07395 ctsR 1428307..1428618 (-) 312 WP_002795361.1 hypothetical protein Machinery gene
  OKF33_RS07400 nifJ 1428642..1432202 (-) 3561 WP_264306061.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  OKF33_RS07405 - 1432306..1432944 (-) 639 WP_057040350.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12341.36 Da        Isoelectric Point: 5.2164

>NTDB_id=748793 OKF33_RS07395 WP_002795361.1 1428307..1428618(-) (ctsR) [Campylobacter coli strain 10-02932]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIEEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=748793 OKF33_RS07395 WP_002795361.1 1428307..1428618(-) (ctsR) [Campylobacter coli strain 10-02932]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGAGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1JQB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553