Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OKF33_RS02945 Genome accession   NZ_CP109654
Coordinates   576033..576803 (+) Length   256 a.a.
NCBI ID   WP_002810979.1    Uniprot ID   A0A5T0DGP4
Organism   Campylobacter coli strain 10-02932     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 571033..581803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKF33_RS02930 - 571909..573843 (-) 1935 WP_264306119.1 ribonuclease R family protein -
  OKF33_RS02935 ilvC 573966..574988 (+) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  OKF33_RS02940 - 574991..576043 (+) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  OKF33_RS02945 dprA 576033..576803 (+) 771 WP_002810979.1 DNA-processing protein DprA Machinery gene
  OKF33_RS02950 ruvX 576800..577180 (+) 381 WP_002776373.1 Holliday junction resolvase RuvX -
  OKF33_RS02955 - 577191..578045 (+) 855 WP_404843017.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  OKF33_RS02960 msrA 578268..578768 (-) 501 WP_002792204.1 peptide-methionine (S)-S-oxide reductase MsrA -
  OKF33_RS02965 ppa 578816..579334 (-) 519 WP_002776378.1 inorganic diphosphatase -
  OKF33_RS02970 - 579344..579919 (-) 576 WP_002781658.1 adenylate kinase -
  OKF33_RS02975 aspS 579916..581667 (-) 1752 WP_264306121.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28789.17 Da        Isoelectric Point: 5.0727

>NTDB_id=748774 OKF33_RS02945 WP_002810979.1 576033..576803(+) (dprA) [Campylobacter coli strain 10-02932]
MQSELPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSTYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPSTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESYYKPKPYDFLLRNRLIVALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDFCRQGVSVDEATQIYGEKVYEYE
LEGKISIEGLFIRVLA

Nucleotide


Download         Length: 771 bp        

>NTDB_id=748774 OKF33_RS02945 WP_002810979.1 576033..576803(+) (dprA) [Campylobacter coli strain 10-02932]
ATGCAAAGTGAACTACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCACTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATCAGTGCAAGT
ATGGCGGCTATGCCAAGCACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCTACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATAGGCTGATTGTCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTACCCCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGTTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGCGTAAGCGTGGATGAGGCAACTCAAATTTATGGAGAAAAAGTCTATGAGTACGAG
CTTGAAGGAAAAATTTCCATAGAAGGTCTCTTTATAAGGGTTTTGGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T0DGP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.654

100

0.77
  dprA Helicobacter pylori 26695

47.917

93.75

0.449