Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   N8A73_RS14580 Genome accession   NZ_CP109651
Coordinates   2815153..2815794 (-) Length   213 a.a.
NCBI ID   WP_034282566.1    Uniprot ID   -
Organism   Bacillus safensis strain LG01     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2810153..2820794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8A73_RS14545 - 2811278..2811709 (+) 432 WP_024423315.1 Na(+)/H(+) antiporter subunit B -
  N8A73_RS14550 - 2811709..2812050 (+) 342 WP_048237322.1 Na(+)/H(+) antiporter subunit C -
  N8A73_RS14555 - 2812043..2813521 (+) 1479 WP_176967248.1 Na+/H+ antiporter subunit D -
  N8A73_RS14560 - 2813528..2814007 (+) 480 WP_024425941.1 Na+/H+ antiporter subunit E -
  N8A73_RS14565 - 2814007..2814288 (+) 282 WP_024425942.1 Na(+)/H(+) antiporter subunit F1 -
  N8A73_RS14570 mnhG 2814272..2814646 (+) 375 WP_024423320.1 monovalent cation/H(+) antiporter subunit G -
  N8A73_RS14575 - 2814740..2815129 (-) 390 WP_024423321.1 hotdog fold thioesterase -
  N8A73_RS14580 comA 2815153..2815794 (-) 642 WP_034282566.1 response regulator transcription factor Regulator
  N8A73_RS14585 comP 2815875..2818187 (-) 2313 WP_034282568.1 ATP-binding protein Regulator
  N8A73_RS14590 comX 2818241..2818411 (-) 171 WP_073207246.1 competence pheromone ComX -
  N8A73_RS14595 - 2818408..2819322 (-) 915 WP_176967247.1 polyprenyl synthetase family protein -
  N8A73_RS14600 degQ 2819474..2819614 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  N8A73_RS14605 - 2820120..2820476 (+) 357 WP_041115816.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24163.56 Da        Isoelectric Point: 4.6397

>NTDB_id=748758 N8A73_RS14580 WP_034282566.1 2815153..2815794(-) (comA) [Bacillus safensis strain LG01]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNHQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=748758 N8A73_RS14580 WP_034282566.1 2815153..2815794(-) (comA) [Bacillus safensis strain LG01]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGACCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCTTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTAA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTTTAGAAACCAACCATCAAGTGAAAATTATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCTATTCGGGCTGGATTACACGGTGCAATTAGTAAAACAGA
GACGAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGGGAAGTTGTCATTCAGCTGTCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACTGATCACGAGCTCTTAACCGAACGGGAGTGTTTGATT
CTTAGAGAAGTGGAAAAAGGATACACGAACCAGGAGATTGCCGATGTGCTTCATTTGAGCAAACGGTCAATTGAGTACAG
TTTGACATCCATCTTTAATAAACTGAATGTTGGATCTCGTACAGAAGCGGTGTTAATTGCCAAGTCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718