Detailed information NTG0748643

Bioinformatically predicted

Overview

• Name: comYH
• Type: Machinery gene
• Locus tag: OF801_RS02560
• Genome accession: NZ_CP109635
• Coordinates: 490599..491534 (+)
• Length: 311 a.a.
• NCBI ID: WP_014025404.1
• Uniprot ID: A0A6L2ZWA9
• Organism: Lactococcus garvieae strain Alexii-11_2
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 485599..496534

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OF801_RS02530 (OF801_02530)	-	486031..486477 (+)	447	WP_003133306.1	Dps family protein	-
OF801_RS02535 (OF801_02535)	-	486515..486895 (-)	381	WP_003133308.1	rhodanese-like domain-containing protein	-
OF801_RS02540 (OF801_02540)	-	486915..487880 (-)	966	WP_003133309.1	ROK family glucokinase	-
OF801_RS02545 (OF801_02545)	-	487873..488085 (-)	213	WP_003133311.1	YqgQ family protein	-
OF801_RS02550 (OF801_02550)	typA	488406..490247 (+)	1842	WP_003133313.1	translational GTPase TypA	-
OF801_RS02555 (OF801_02555)	-	490323..490553 (+)	231	WP_264308489.1	DUF3165 domain-containing protein	-
OF801_RS02560 (OF801_02560)	comYH	490599..491534 (+)	936	WP_014025404.1	class I SAM-dependent methyltransferase	Machinery gene
OF801_RS02565 (OF801_02565)	-	491619..492812 (+)	1194	WP_042218440.1	acetate kinase	-
OF801_RS02570 (OF801_02570)	-	492931..494124 (+)	1194	WP_003133320.1	acetate kinase	-
OF801_RS02575 (OF801_02575)	pyrH	494215..494931 (+)	717	WP_003133322.1	UMP kinase	-
OF801_RS02580 (OF801_02580)	frr	494961..495518 (+)	558	WP_003133324.1	ribosome recycling factor	-
OF801_RS02585 (OF801_02585)	-	495626..496486 (+)	861	WP_003133325.1	S1 RNA-binding domain-containing protein	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35138.19 Da
• Isoelectric Point: 4.6737

>NTDB_id=748643 OF801_RS02560 WP_014025404.1 490599..491534(+) (comYH) [Lactococcus garvieae strain Alexii-11_2]
MDIEKIEKAFGLVLENIMAIQAELLTDFYDAFVEQNAAYLGALEFASLTKENNDKVRSMNLTKSEWQKLFQFVLLQGSRV
APMQANHNLTPDSIGFIFNFIIEELHKERKIRVLEFGSGTGNLAETLLVHMQKEVDYVGFEVDDLLLDLSASMSEVMGTE
ASFLQIDAVKPQPLESVDVVMSDLPVGYYPDDETARHFQVHDKSEHTYVHHLMIEQSFKYLKESGFALFLAPDNLLTSAQ
SEFLKAWIKEHAHVAAVITLPSSLFKGAGKSIYLLSKNQTNTPTFVYPLADLADRSILQEFMSEFVKNVKI

Nucleotide

• Length: 936 bp

>NTDB_id=748643 OF801_RS02560 WP_014025404.1 490599..491534(+) (comYH) [Lactococcus garvieae strain Alexii-11_2]
ATGGATATAGAGAAAATCGAAAAAGCCTTTGGATTGGTTCTTGAAAATATTATGGCAATTCAAGCGGAGCTCTTGACGGA
TTTTTATGATGCTTTTGTGGAACAAAATGCAGCTTACTTAGGCGCTTTAGAGTTTGCATCTCTGACGAAGGAAAATAATG
ATAAGGTTCGTTCAATGAACCTCACGAAAAGTGAGTGGCAAAAGCTGTTTCAGTTTGTCTTGCTTCAAGGGTCACGTGTC
GCACCAATGCAAGCAAATCATAATTTAACACCAGATTCTATTGGGTTTATCTTTAATTTTATCATTGAAGAGTTGCACAA
AGAAAGAAAGATTCGTGTACTAGAATTTGGCTCAGGAACAGGGAATTTAGCGGAAACGCTCTTGGTTCACATGCAAAAAG
AAGTAGACTATGTTGGTTTTGAAGTAGATGACCTCTTGTTGGATTTGTCCGCTTCAATGTCCGAAGTCATGGGAACAGAA
GCAAGTTTTCTCCAAATTGACGCCGTGAAACCACAGCCCTTGGAGTCTGTAGATGTTGTGATGAGTGATCTCCCGGTTGG
TTATTATCCAGACGATGAAACTGCTCGCCATTTTCAAGTGCATGACAAATCAGAACATACCTATGTGCACCACTTAATGA
TTGAGCAATCCTTTAAGTATCTGAAGGAGAGTGGTTTTGCGCTCTTCTTAGCTCCAGATAATCTTTTGACAAGTGCACAG
TCAGAATTTTTGAAGGCTTGGATTAAAGAACATGCACATGTTGCTGCAGTCATTACATTGCCTTCATCACTCTTTAAAGG
TGCAGGAAAATCGATTTATTTATTAAGTAAAAACCAAACAAATACACCAACTTTTGTTTACCCCTTGGCTGATTTAGCAG
ACCGTTCTATTTTGCAAGAATTTATGTCTGAGTTTGTGAAAAATGTCAAGATTTGA

Domains

Predicted by InterproScan.

• N-6 DNA Methylase (N6_Mtase) (132-286)

3D structure

• AlphaFold DB: A0A6L2ZWA9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYH	Streptococcus mutans UA140	49.677	99.678	0.495
comYH	Streptococcus mutans UA159	49.355	99.678	0.492