Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   OGV21_RS07200 Genome accession   NZ_CP109606
Coordinates   1580753..1582969 (+) Length   738 a.a.
NCBI ID   WP_264316899.1    Uniprot ID   -
Organism   Pseudomonas putida strain QH1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1575753..1587969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGV21_RS07180 - 1577623..1578246 (+) 624 WP_012271143.1 glutathione S-transferase -
  OGV21_RS07185 - 1578380..1579312 (+) 933 WP_012271144.1 ABC transporter ATP-binding protein -
  OGV21_RS07190 - 1579309..1580088 (+) 780 WP_012271145.1 ABC transporter permease -
  OGV21_RS07195 - 1579972..1580610 (-) 639 WP_141729025.1 DUF2062 domain-containing protein -
  OGV21_RS07200 comA 1580753..1582969 (+) 2217 WP_264316899.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OGV21_RS07205 exbB 1583037..1583672 (+) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OGV21_RS07210 - 1583669..1584103 (+) 435 WP_012271149.1 ExbD/TolR family protein -
  OGV21_RS07215 lpxK 1584103..1585104 (+) 1002 WP_264316900.1 tetraacyldisaccharide 4'-kinase -
  OGV21_RS07220 - 1585149..1585334 (+) 186 WP_003247142.1 Trm112 family protein -
  OGV21_RS07225 kdsB 1585331..1586095 (+) 765 WP_060515140.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OGV21_RS07230 - 1586095..1586559 (+) 465 WP_060493584.1 low molecular weight protein-tyrosine-phosphatase -
  OGV21_RS07235 murB 1586556..1587575 (+) 1020 WP_012271153.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79769.66 Da        Isoelectric Point: 9.2169

>NTDB_id=748442 OGV21_RS07200 WP_264316899.1 1580753..1582969(+) (comA) [Pseudomonas putida strain QH1]
MRTGMFALALGLLCLGFLPALPSVGWLLVLAGCAVVSLFTRGWPLGCFLLGFCWACWSAQQALDDRLASGLDGRTLWLEG
RVVGLPTRTAQGVRFELEAARSRRAELPQRLQLSWFEGPTLRAGEQWRLAVTLQRPAGLLNPHGPDREAYLLARRVGATG
TVKAGQLLAPVTGGWRDALRQRLLAVEANGREQALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAVLARWGLWPARLPWLPWACGLAMTAALGYGWLAGGGVPVQRACLMLAVVLLWRLRFRHLGAFLPLLLALVAVLLVEPL
AALLPGFWLSFAAVATLIYCFSARLGAWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLVAVPWISLAVLPLAL
LGTLLLPLGGVGEALLWLAGGLLDWLFRLLALVAQQRPAWVPPALPLWAWLLVCLGALLVLLPRGVPLRGLGAVMLLALW
VPREPVPLGQVEVWQLDVGQGLAVLLRTQHHNLLYDAGPAKGESDLGERVVLPTLHKLGVASLDLMVISHAHADHAGGAG
AIQRGLPVKRVIGGEALEHFELQPCVSGEQWEWDGVRFSLWHWADGQSSNDRSCVLLVEAQGERLLLAGDMEAGAERAWL
AATEVPGIDWLQAPHHGSRSSSTEAFIRATAPRGVLVSRGRNNSFGHPHAQVVERYRRHGAVMHDTAVEGALRVVLGRHG
EAEGVRVQRRFWREVAIP

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=748442 OGV21_RS07200 WP_264316899.1 1580753..1582969(+) (comA) [Pseudomonas putida strain QH1]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTTTTGTGCCTGGGCTTTCTCCCCGCGTTGCCATCGGTCGGATGGCT
GCTGGTGCTGGCCGGCTGCGCTGTCGTCAGCCTGTTTACCCGGGGTTGGCCGTTGGGCTGTTTTCTCCTGGGCTTCTGTT
GGGCTTGCTGGTCTGCGCAGCAGGCGCTCGATGATCGCCTGGCTAGCGGTCTGGATGGCCGCACCCTGTGGCTGGAAGGG
CGGGTGGTTGGTTTGCCGACCCGAACAGCACAAGGCGTGCGTTTCGAGTTGGAGGCGGCACGCTCGCGGCGGGCCGAACT
ACCGCAGCGCCTGCAATTGAGCTGGTTCGAAGGGCCGACACTGAGGGCGGGCGAGCAGTGGCGGCTGGCCGTGACCTTGC
AGCGTCCGGCTGGGCTGCTCAATCCGCATGGGCCGGACCGGGAGGCCTATTTGCTGGCGCGGCGAGTGGGCGCCACGGGC
ACGGTCAAGGCGGGGCAGCTGCTGGCTCCCGTGACCGGTGGCTGGCGCGATGCGCTGCGTCAGCGCTTGCTTGCGGTCGA
GGCCAATGGTCGTGAGCAAGCGTTGGTGGCGTTGGTGCTGGGCGATGGAGCGGGCCTGGCCAGGGAGGACTGGCAGACAT
TGCAGGCCACCGGCACGGTGCACCTGTTGGTAATTTCTGGCCAGCATATCGGCCTGGTCGCCGGTTTGCTCTACGGCCTG
GTTGCCGTGCTGGCGCGTTGGGGGCTGTGGCCGGCACGGCTGCCATGGCTACCCTGGGCCTGCGGTCTGGCCATGACCGC
GGCGCTGGGCTACGGCTGGTTGGCCGGCGGCGGTGTGCCCGTGCAGCGCGCCTGCCTGATGCTGGCTGTGGTGTTGCTCT
GGCGCCTGCGCTTTCGCCACCTTGGGGCTTTTTTACCCTTGTTGCTGGCGCTCGTTGCTGTGCTGCTGGTTGAGCCGCTG
GCGGCGCTGCTTCCTGGGTTCTGGCTGTCGTTTGCTGCCGTGGCCACGCTCATCTATTGCTTCAGTGCTCGCTTGGGCGC
TTGGCGGCCTTGGCAGGCTTGGACGCGTGCGCAATGGGTTATTGCCATCGGCTTGCTACCGGTACTGCTGGCTACAGGCT
TGCCGGTAAGCCTGAGTGCACCGCTGGCCAACCTTGTGGCAGTGCCGTGGATCAGCCTGGCGGTTTTGCCGTTGGCGTTG
CTGGGTACGTTGTTGCTGCCGCTGGGCGGAGTAGGGGAGGCGCTGTTGTGGCTGGCGGGCGGCTTGCTGGATTGGCTGTT
CCGGCTGCTGGCACTGGTGGCGCAGCAGCGCCCGGCATGGGTGCCGCCGGCCTTGCCACTGTGGGCCTGGCTGTTGGTCT
GTCTGGGTGCGTTGTTGGTTTTGCTACCCCGCGGTGTGCCGCTGCGCGGGTTGGGAGCGGTGATGCTGCTGGCGCTGTGG
GTGCCCAGGGAGCCGGTGCCGCTCGGGCAAGTCGAGGTCTGGCAGCTGGACGTTGGCCAGGGGCTGGCGGTGCTGTTGCG
TACCCAGCACCACAACCTGTTGTATGACGCCGGGCCGGCCAAGGGCGAAAGTGACCTGGGGGAGCGAGTGGTGCTGCCGA
CTTTGCATAAGCTGGGGGTGGCCAGCCTAGACCTGATGGTGATCAGCCATGCGCATGCCGACCATGCGGGTGGGGCGGGG
GCCATTCAGCGGGGTTTGCCGGTCAAGCGGGTTATCGGTGGTGAAGCGCTGGAACACTTTGAGCTGCAGCCTTGTGTGAG
TGGTGAACAGTGGGAATGGGACGGCGTGCGCTTTTCGCTGTGGCACTGGGCTGATGGGCAGAGCAGCAACGACCGCTCCT
GCGTGCTGCTGGTCGAGGCCCAGGGCGAGCGATTGTTGTTGGCTGGTGATATGGAGGCTGGCGCCGAACGGGCCTGGCTG
GCAGCCACTGAAGTGCCCGGAATCGACTGGCTGCAGGCTCCACACCATGGCAGCCGCAGTTCGTCCACCGAGGCGTTCAT
CCGTGCTACCGCACCGCGTGGGGTTTTGGTTTCGCGTGGGCGCAACAACAGCTTCGGGCACCCGCATGCGCAGGTCGTGG
AGCGGTATCGGCGGCACGGGGCGGTGATGCATGACACGGCGGTGGAGGGGGCGTTGCGGGTGGTGCTGGGGCGGCACGGG
GAAGCGGAAGGTGTGCGGGTGCAGCGGCGATTCTGGCGTGAGGTCGCAATTCCCTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.388

97.425

0.579
  comA Ralstonia pseudosolanacearum GMI1000

36.753

100

0.383