Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   F6Y16_RS04235 Genome accession   NZ_AP020318
Coordinates   826543..827415 (-) Length   290 a.a.
NCBI ID   WP_150014924.1    Uniprot ID   -
Organism   Staphylococcus aureus strain KUH180038     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 821543..832415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6Y16_RS04225 (KUH180038_0776) trmFO 822831..824138 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  F6Y16_RS04230 (KUH180038_0777) topA 824294..826369 (-) 2076 WP_001548566.1 type I DNA topoisomerase -
  F6Y16_RS04235 (KUH180038_0778) dprA 826543..827415 (-) 873 WP_150014924.1 DNA-processing protein DprA Machinery gene
  F6Y16_RS04240 (KUH180038_0779) fmhC 827588..828832 (-) 1245 WP_000672867.1 FemA/FemB family glycyltransferase FmhC -
  F6Y16_RS04245 (KUH180038_0780) - 828860..829978 (-) 1119 WP_001041662.1 LysM peptidoglycan-binding domain-containing protein -
  F6Y16_RS04250 (KUH180038_0781) sucD 830205..831113 (-) 909 WP_061821480.1 succinate--CoA ligase subunit alpha -
  F6Y16_RS04255 (KUH180038_0782) sucC 831135..832301 (-) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33559.93 Da        Isoelectric Point: 9.5302

>NTDB_id=74720 F6Y16_RS04235 WP_150014924.1 826543..827415(-) (dprA) [Staphylococcus aureus strain KUH180038]
MIKLFLLKLYWAHFSTKQIHQFLMAYPNVIKEEGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDSEDPVLLKEIYQFPLRLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=74720 F6Y16_RS04235 WP_150014924.1 826543..827415(-) (dprA) [Staphylococcus aureus strain KUH180038]
TTGATTAAACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGAGGGAAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATTCTGAAGACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACGTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCTGAATATCCACCACATACACCAATCGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

99.31

100

0.993
  dprA Staphylococcus aureus N315

98.966

100

0.99

Multiple sequence alignment