Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | F6Y18_RS13780 | Genome accession | NZ_AP020316 |
| Coordinates | 2741564..2742007 (+) | Length | 147 a.a. |
| NCBI ID | WP_001099009.1 | Uniprot ID | A0A0C6EXF8 |
| Organism | Staphylococcus aureus strain KUH140331 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2726092..2750930 | 2741564..2742007 | within | 0 |
Gene organization within MGE regions
Location: 2726092..2750930
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F6Y18_RS13665 (KUH140331_2546) | - | 2726092..2726535 (+) | 444 | WP_000361985.1 | hypothetical protein | - |
| F6Y18_RS13670 (KUH140331_2547) | - | 2727258..2728481 (-) | 1224 | WP_000206642.1 | ArgE/DapE family deacylase | - |
| F6Y18_RS13675 (KUH140331_2548) | lukH | 2728917..2729972 (+) | 1056 | WP_000791418.1 | bi-component leukocidin LukGH subunit H | - |
| F6Y18_RS13680 (KUH140331_2549) | lukG | 2729994..2731010 (+) | 1017 | WP_000595393.1 | bi-component leukocidin LukGH subunit G | - |
| F6Y18_RS13685 (KUH140331_2550) | sph | 2731248..2732072 (-) | 825 | Protein_2604 | sphingomyelin phosphodiesterase | - |
| F6Y18_RS13690 (KUH140331_2551) | - | 2732129..2733166 (-) | 1038 | WP_150030519.1 | tyrosine-type recombinase/integrase | - |
| F6Y18_RS13695 (KUH140331_2552) | - | 2733359..2734063 (-) | 705 | WP_017804779.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| F6Y18_RS13700 (KUH140331_2553) | - | 2734203..2734370 (-) | 168 | WP_031808066.1 | hypothetical protein | - |
| F6Y18_RS13705 (KUH140331_2554) | - | 2734570..2735286 (-) | 717 | WP_001083969.1 | LexA family transcriptional regulator | - |
| F6Y18_RS13710 (KUH140331_2555) | - | 2735450..2735692 (+) | 243 | WP_000639925.1 | DUF739 family protein | - |
| F6Y18_RS13715 (KUH140331_2556) | - | 2735708..2736496 (+) | 789 | WP_070046044.1 | phage antirepressor | - |
| F6Y18_RS13720 (KUH140331_2557) | - | 2736510..2736770 (+) | 261 | WP_000435341.1 | transcriptional regulator | - |
| F6Y18_RS13725 (KUH140331_2558) | - | 2736794..2737333 (-) | 540 | WP_000351243.1 | hypothetical protein | - |
| F6Y18_RS13730 (KUH140331_2559) | - | 2737390..2738139 (+) | 750 | WP_117207726.1 | phage antirepressor KilAC domain-containing protein | - |
| F6Y18_RS13735 (KUH140331_2560) | - | 2738155..2738352 (+) | 198 | WP_001148861.1 | hypothetical protein | - |
| F6Y18_RS13740 (KUH140331_2561) | - | 2738383..2738523 (+) | 141 | WP_000939496.1 | hypothetical protein | - |
| F6Y18_RS13745 (KUH140331_2562) | - | 2738538..2739170 (-) | 633 | WP_000275058.1 | hypothetical protein | - |
| F6Y18_RS13750 (KUH140331_2563) | - | 2739229..2739549 (+) | 321 | WP_001120197.1 | DUF771 domain-containing protein | - |
| F6Y18_RS13755 (KUH140331_2564) | - | 2739546..2739707 (+) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| F6Y18_RS13760 (KUH140331_2565) | - | 2739797..2740126 (+) | 330 | WP_000138304.1 | hypothetical protein | - |
| F6Y18_RS13765 (KUH140331_2566) | - | 2740107..2740367 (+) | 261 | WP_031880059.1 | DUF1108 family protein | - |
| F6Y18_RS13770 (KUH140331_2567) | - | 2740380..2740916 (+) | 537 | WP_001004336.1 | host-nuclease inhibitor Gam family protein | - |
| F6Y18_RS13775 (KUH140331_2568) | - | 2740917..2741567 (+) | 651 | WP_000840496.1 | ERF family protein | - |
| F6Y18_RS13780 (KUH140331_2569) | ssbA | 2741564..2742007 (+) | 444 | WP_001099009.1 | single-stranded DNA-binding protein | Machinery gene |
| F6Y18_RS13785 (KUH140331_2570) | - | 2742019..2742693 (+) | 675 | WP_063456299.1 | putative HNHc nuclease | - |
| F6Y18_RS13790 (KUH140331_2572) | - | 2742803..2743462 (-) | 660 | WP_016028252.1 | hypothetical protein | - |
| F6Y18_RS13795 (KUH140331_2573) | - | 2743508..2744278 (+) | 771 | WP_000190226.1 | conserved phage C-terminal domain-containing protein | - |
| F6Y18_RS13800 (KUH140331_2574) | - | 2744288..2745061 (+) | 774 | WP_117216985.1 | ATP-binding protein | - |
| F6Y18_RS13805 (KUH140331_2575) | - | 2745055..2745213 (+) | 159 | WP_015997089.1 | hypothetical protein | - |
| F6Y18_RS13810 (KUH140331_2576) | - | 2745226..2745449 (+) | 224 | Protein_2629 | DUF3269 family protein | - |
| F6Y18_RS13820 (KUH140331_2577) | - | 2745460..2745864 (+) | 405 | WP_000049784.1 | DUF1064 domain-containing protein | - |
| F6Y18_RS13825 (KUH140331_2578) | - | 2745869..2746054 (+) | 186 | WP_001187242.1 | DUF3113 family protein | - |
| F6Y18_RS13830 (KUH140331_2579) | - | 2746055..2746426 (+) | 372 | WP_115282698.1 | SA1788 family PVL leukocidin-associated protein | - |
| F6Y18_RS13835 (KUH140331_2580) | - | 2746426..2746683 (+) | 258 | WP_000022720.1 | DUF3310 domain-containing protein | - |
| F6Y18_RS13840 (KUH140331_2581) | - | 2746686..2746886 (+) | 201 | WP_000235326.1 | hypothetical protein | - |
| F6Y18_RS13845 (KUH140331_2582) | - | 2746895..2747143 (+) | 249 | WP_117216382.1 | SAV1978 family virulence-associated passenger protein | - |
| F6Y18_RS13850 (KUH140331_2583) | - | 2747157..2747408 (+) | 252 | WP_001065074.1 | DUF1024 family protein | - |
| F6Y18_RS13955 (KUH140331_2584) | - | 2747398..2747571 (+) | 174 | WP_000028424.1 | hypothetical protein | - |
| F6Y18_RS13855 (KUH140331_2585) | - | 2747572..2747853 (+) | 282 | WP_000454994.1 | hypothetical protein | - |
| F6Y18_RS13960 (KUH140331_2586) | - | 2747854..2748015 (+) | 162 | WP_172571785.1 | hypothetical protein | - |
| F6Y18_RS13860 (KUH140331_2587) | - | 2748030..2748557 (+) | 528 | WP_117216380.1 | dUTPase | - |
| F6Y18_RS13865 (KUH140331_2588) | - | 2748594..2748800 (+) | 207 | WP_000195810.1 | DUF1381 domain-containing protein | - |
| F6Y18_RS13870 (KUH140331_2589) | rinB | 2748797..2748946 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| F6Y18_RS13875 (KUH140331_2591) | - | 2749105..2749755 (+) | 651 | WP_001005262.1 | hypothetical protein | - |
| F6Y18_RS13880 (KUH140331_2592) | - | 2749755..2749955 (+) | 201 | WP_001794311.1 | DUF1514 family protein | - |
| F6Y18_RS13885 (KUH140331_2593) | - | 2749983..2750399 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| F6Y18_RS13890 (KUH140331_2594) | - | 2750631..2750930 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 147 a.a. Molecular weight: 16321.89 Da Isoelectric Point: 5.8347
>NTDB_id=74697 F6Y18_RS13780 WP_001099009.1 2741564..2742007(+) (ssbA) [Staphylococcus aureus strain KUH140331]
MNTVNLIGNLVADPELKGQNNNVVNFVIAVQRPFKNKQTNEYETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQTGSY
ENNQGQKVFTTDIAVNNITFVERKNNGQSNNQQQHNSYNAPQNRQQSNNPFANANGPIEISDDDLPF
MNTVNLIGNLVADPELKGQNNNVVNFVIAVQRPFKNKQTNEYETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQTGSY
ENNQGQKVFTTDIAVNNITFVERKNNGQSNNQQQHNSYNAPQNRQQSNNPFANANGPIEISDDDLPF
Nucleotide
Download Length: 444 bp
>NTDB_id=74697 F6Y18_RS13780 WP_001099009.1 2741564..2742007(+) (ssbA) [Staphylococcus aureus strain KUH140331]
ATGAATACAGTAAATTTAATTGGGAACCTAGTGGCAGATCCAGAGTTAAAAGGTCAAAACAACAACGTAGTTAACTTTGT
AATCGCAGTACAGAGACCATTCAAAAACAAACAAACTAACGAATATGAAACAGACTTCATTCGTTGTGTTGCATTTGGTA
AGACTGCTGAAATCATCGCTAATAACTTTAATAAAGGTAATAAAATTGGCGTTACTGGTTCAATACAAACCGGTAGTTAT
GAAAATAATCAAGGACAGAAAGTGTTTACTACAGACATCGCAGTCAACAATATAACTTTCGTTGAACGTAAAAACAACGG
TCAATCTAACAACCAACAACAGCATAATTCATATAACGCACCACAGAATAGACAGCAATCAAATAATCCATTTGCTAATG
CTAATGGTCCTATAGAAATCTCTGACGATGATTTACCTTTCTAG
ATGAATACAGTAAATTTAATTGGGAACCTAGTGGCAGATCCAGAGTTAAAAGGTCAAAACAACAACGTAGTTAACTTTGT
AATCGCAGTACAGAGACCATTCAAAAACAAACAAACTAACGAATATGAAACAGACTTCATTCGTTGTGTTGCATTTGGTA
AGACTGCTGAAATCATCGCTAATAACTTTAATAAAGGTAATAAAATTGGCGTTACTGGTTCAATACAAACCGGTAGTTAT
GAAAATAATCAAGGACAGAAAGTGTTTACTACAGACATCGCAGTCAACAATATAACTTTCGTTGAACGTAAAAACAACGG
TCAATCTAACAACCAACAACAGCATAATTCATATAACGCACCACAGAATAGACAGCAATCAAATAATCCATTTGCTAATG
CTAATGGTCCTATAGAAATCTCTGACGATGATTTACCTTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
41.279 |
100 |
0.483 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
38.235 |
100 |
0.442 |