Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   QAO20_RS07915 Genome accession   NZ_CP123106
Coordinates   1639763..1640875 (-) Length   370 a.a.
NCBI ID   WP_000775112.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IT-MSSA50     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1634763..1645875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO20_RS07905 (QAO20_07870) gyrA 1635122..1637782 (-) 2661 WP_111065166.1 DNA gyrase subunit A -
  QAO20_RS07910 (QAO20_07875) gyrB 1637819..1639753 (-) 1935 WP_000255586.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  QAO20_RS07915 (QAO20_07880) recF 1639763..1640875 (-) 1113 WP_000775112.1 DNA replication/repair protein RecF Machinery gene
  QAO20_RS07920 (QAO20_07885) yaaA 1640872..1641117 (-) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  QAO20_RS07925 (QAO20_07890) dnaN 1641497..1642630 (-) 1134 WP_000969807.1 DNA polymerase III subunit beta -
  QAO20_RS07930 (QAO20_07895) dnaA 1642908..1644269 (-) 1362 WP_001290433.1 chromosomal replication initiator protein DnaA -
  QAO20_RS07935 (QAO20_07900) rpmH 1645000..1645137 (+) 138 WP_000240854.1 50S ribosomal protein L34 -
  QAO20_RS07940 (QAO20_07905) rnpA 1645258..1645611 (+) 354 WP_001789343.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42401.40 Da        Isoelectric Point: 6.4359

>NTDB_id=746923 QAO20_RS07915 WP_000775112.1 1639763..1640875(-) (recF) [Staphylococcus aureus strain IT-MSSA50]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAAR
LEDIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=746923 QAO20_RS07915 WP_000775112.1 1639763..1640875(-) (recF) [Staphylococcus aureus strain IT-MSSA50]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAACAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTGTCGCTGAATTATTTACCTAGTCTTAAATTTGATTATGCTCAAAATGAAGCGGCACGA
CTTGAAGACATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGACGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAACAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCACAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.649

100

0.586
  recF Streptococcus pneumoniae R6

48.525

100

0.489