Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QAO20_RS05745 Genome accession   NZ_CP123106
Coordinates   1177398..1177994 (-) Length   198 a.a.
NCBI ID   WP_000559156.1    Uniprot ID   Q8NY07
Organism   Staphylococcus aureus strain IT-MSSA50     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1172398..1182994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO20_RS05745 (QAO20_05715) recR 1177398..1177994 (-) 597 WP_000559156.1 recombination mediator RecR Machinery gene
  QAO20_RS05750 (QAO20_05720) - 1178001..1178318 (-) 318 WP_045173147.1 YbaB/EbfC family nucleoid-associated protein -
  QAO20_RS05755 (QAO20_05725) dnaX 1178408..1180105 (-) 1698 WP_001109046.1 DNA polymerase III subunit gamma/tau -
  QAO20_RS05760 (QAO20_05730) - 1180174..1180698 (-) 525 WP_001167821.1 GNAT family N-acetyltransferase -
  QAO20_RS05765 (QAO20_05735) - 1180837..1180938 (-) 102 WP_042899944.1 hypothetical protein -
  QAO20_RS05775 (QAO20_05745) treR 1181339..1182067 (-) 729 WP_001118676.1 trehalose operon repressor -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22099.51 Da        Isoelectric Point: 4.7564

>NTDB_id=746918 QAO20_RS05745 WP_000559156.1 1177398..1177994(-) (recR) [Staphylococcus aureus strain IT-MSSA50]
MHYPEPISKLIDSFMKLPGIGPKTAQRLAFHTLDMKEDDVVQFAKALVDVKRELTYCSVCGHITENDPCYICEDKQRDRS
VICVVEDDKDVIAMEKMREYKGLYHVLHGSISPMDGIGPEDINIPSLIERLKNDEVSELILAMNPNLEGESTAMYISRLV
KPIGIKVTRLAQGLSVGGDLEYADEVTLSKAIAGRTEM

Nucleotide


Download         Length: 597 bp        

>NTDB_id=746918 QAO20_RS05745 WP_000559156.1 1177398..1177994(-) (recR) [Staphylococcus aureus strain IT-MSSA50]
ATGCATTATCCAGAACCTATATCAAAGCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACG
TCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAAAGAGAAT
TAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATATTTGTGAAGATAAGCAAAGAGATCGTTCA
GTTATTTGTGTTGTGGAAGATGACAAAGATGTCATAGCTATGGAAAAAATGAGAGAATACAAAGGTTTATATCACGTTTT
ACATGGGTCTATTTCGCCTATGGATGGAATTGGACCAGAAGACATTAATATTCCTTCATTGATTGAACGCTTGAAAAACG
ATGAAGTTAGCGAATTAATCTTAGCTATGAACCCGAACTTAGAGGGGGAATCTACTGCCATGTATATTTCTAGATTAGTT
AAGCCTATAGGTATCAAAGTGACGAGATTAGCACAAGGATTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAAC
ATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8NY07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

77.273

100

0.773
  recR Streptococcus pneumoniae R6

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475