Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QAY69_RS12425 Genome accession   NZ_CP123091
Coordinates   2497297..2497893 (+) Length   198 a.a.
NCBI ID   WP_000559160.1    Uniprot ID   Q932G3
Organism   Staphylococcus aureus strain MRSA-Mu50     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2492297..2502893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAY69_RS12395 (QAY69_12380) treR 2493222..2493950 (+) 729 WP_001118675.1 trehalose operon repressor -
  QAY69_RS12405 (QAY69_12390) - 2494354..2494455 (+) 102 WP_001790661.1 hypothetical protein -
  QAY69_RS12410 (QAY69_12395) - 2494593..2495117 (+) 525 WP_001167828.1 GNAT family N-acetyltransferase -
  QAY69_RS12415 (QAY69_12400) dnaX 2495186..2496883 (+) 1698 WP_001109040.1 DNA polymerase III subunit gamma/tau -
  QAY69_RS12420 (QAY69_12405) - 2496973..2497290 (+) 318 WP_001213992.1 YbaB/EbfC family nucleoid-associated protein -
  QAY69_RS12425 (QAY69_12410) recR 2497297..2497893 (+) 597 WP_000559160.1 recombination mediator RecR Machinery gene
  QAY69_RS12430 (QAY69_12415) - 2498098..2498203 (+) 106 Protein_2423 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22102.51 Da        Isoelectric Point: 4.7564

>NTDB_id=746316 QAY69_RS12425 WP_000559160.1 2497297..2497893(+) (recR) [Staphylococcus aureus strain MRSA-Mu50]
MHYPEPISKLIDSFMKLPGIGPKTAQRLAFHTLDMKEDDVVQFAKALVDVKRELTYCSVCGHITENDPCYICEDKQRDRS
VICVVEDDKDVIAMEKMREYKGLYHVLHGSISPMDGIGPEDINIPSLIERLKSDEVSELILAMNPNLEGESTAMYISRLV
KPIGIKVTRLAQGLSVGGDLEYADEVTLSKAITGRTEM

Nucleotide


Download         Length: 597 bp        

>NTDB_id=746316 QAY69_RS12425 WP_000559160.1 2497297..2497893(+) (recR) [Staphylococcus aureus strain MRSA-Mu50]
ATGCATTATCCAGAACCTATATCAAAGCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACG
TCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAAT
TAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATATTTGTGAAGATAAACAAAGAGATCGTTCA
GTTATTTGTGTTGTGGAAGATGACAAAGATGTCATAGCTATGGAAAAAATGAGAGAATACAAAGGTTTATATCACGTTTT
ACATGGGTCTATTTCACCTATGGATGGCATTGGACCAGAAGATATTAATATTCCTTCATTGATTGAACGCTTGAAAAGCG
ATGAAGTTAGCGAATTAATCTTAGCTATGAACCCGAACTTAGAGGGGGAATCTACAGCCATGTATATTTCTAGATTAGTT
AAGCCTATAGGTATCAAAGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAAC
ATTATCTAAAGCAATCACAGGTAGAACAGAAATGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q932G3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

77.273

100

0.773
  recR Streptococcus pneumoniae R6

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.718

98.485

0.48