Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   K6K00_RS04980 Genome accession   NZ_AP024628
Coordinates   978388..979035 (+) Length   215 a.a.
NCBI ID   WP_014479290.1    Uniprot ID   -
Organism   Bacillus subtilis strain BEST3145     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 973388..984035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6K00_RS04965 (BsBEST3145_09350) glpD 973559..975226 (+) 1668 WP_014479287.1 glycerol-3-phosphate dehydrogenase -
  K6K00_RS04970 (BsBEST3145_09360) pgcA 975358..977103 (+) 1746 WP_014479288.1 phosphoglucomutase -
  K6K00_RS04975 (BsBEST3145_09370) yhcY 977252..978391 (+) 1140 WP_014479289.1 two-component system sensor histidine kinase YhcY -
  K6K00_RS04980 (BsBEST3145_09380) vraR 978388..979035 (+) 648 WP_014479290.1 two-component system response regulator YhcZ Regulator
  K6K00_RS04985 (BsBEST3145_09390) yhdA 979032..979556 (+) 525 WP_014479291.1 FMN-dependent NADPH-azoreductase -
  K6K00_RS04990 (BsBEST3145_09400) yhdB 979571..979813 (-) 243 WP_003233373.1 YhdB family protein -
  K6K00_RS04995 (BsBEST3145_09410) yhdC 980014..980337 (+) 324 WP_014476269.1 YqzG/YhdC family protein -
  K6K00_RS05000 (BsBEST3145_09420) lytF 980379..981845 (-) 1467 WP_221251757.1 peptidoglycan endopeptidase -
  K6K00_RS05005 (BsBEST3145_09430) nsrR 981998..982438 (-) 441 WP_003245378.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24135.75 Da        Isoelectric Point: 6.3034

>NTDB_id=74609 K6K00_RS04980 WP_014479290.1 978388..979035(+) (vraR) [Bacillus subtilis strain BEST3145]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGIEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPDTNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHGGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=74609 K6K00_RS04980 WP_014479290.1 978388..979035(+) (vraR) [Bacillus subtilis strain BEST3145]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTCGTCGGAGAAGCTGCAACCGGAATAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGATACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGGTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTAA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACTAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCGAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGATCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAATCTGAATGGAGAGATCT
CAAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

38.428

100

0.409

Multiple sequence alignment