Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   QAY76_RS01760 Genome accession   NZ_CP123072
Coordinates   325631..326893 (+) Length   420 a.a.
NCBI ID   WP_000472302.1    Uniprot ID   P63789
Organism   Staphylococcus aureus strain SW-MSSA62     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 320631..331893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAY76_RS01725 (QAY76_01715) infC 321159..321686 (+) 528 WP_138079903.1 translation initiation factor IF-3 -
  QAY76_RS01730 (QAY76_01720) rpmI 321715..321915 (+) 201 WP_001125540.1 50S ribosomal protein L35 -
  QAY76_RS01735 (QAY76_01725) rplT 321962..322318 (+) 357 WP_001138360.1 50S ribosomal protein L20 -
  QAY76_RS01740 (QAY76_01730) - 322460..323068 (+) 609 WP_000032657.1 NUDIX domain-containing protein -
  QAY76_RS01745 (QAY76_01735) - 323087..324016 (+) 930 WP_001280024.1 hypothetical protein -
  QAY76_RS01750 (QAY76_01740) - 324021..324131 (+) 111 WP_001790560.1 hypothetical protein -
  QAY76_RS01755 (QAY76_01745) tig 324179..325480 (+) 1302 WP_000127573.1 trigger factor -
  QAY76_RS01760 (QAY76_01750) clpX 325631..326893 (+) 1263 WP_000472302.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  QAY76_RS01765 (QAY76_01755) yihA 327047..327637 (+) 591 WP_000867697.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  QAY76_RS01770 (QAY76_01760) hemA 327854..329200 (+) 1347 WP_411893008.1 glutamyl-tRNA reductase -
  QAY76_RS01775 (QAY76_01765) ccsA 329222..330037 (+) 816 WP_001157329.1 cytochrome c biogenesis protein -
  QAY76_RS01780 (QAY76_01770) hemC 330079..331005 (+) 927 WP_001230228.1 hydroxymethylbilane synthase -
  QAY76_RS01785 (QAY76_01775) - 331027..331695 (+) 669 WP_000805939.1 uroporphyrinogen-III synthase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46297.48 Da        Isoelectric Point: 4.2645

>NTDB_id=745547 QAY76_RS01760 WP_000472302.1 325631..326893(+) (clpX) [Staphylococcus aureus strain SW-MSSA62]
MFKFNEDEENLKCSFCGKDQDQVKKLVAGSGVYICNECIELCSEIVEEELAQNTSEAMTELPTPKEIMDHLNEYVIGQEK
AKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENIL
LRLIQAADFDIDKAEKGIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQIDTTN
ILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIPEFIGRVPIVANLETLDVTALKNIL
TQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKAIERKTGARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTINEE
TEPELYDAEGNLINNSKTSA

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=745547 QAY76_RS01760 WP_000472302.1 325631..326893(+) (clpX) [Staphylococcus aureus strain SW-MSSA62]
ATGTTTAAATTCAATGAAGATGAAGAAAATTTGAAATGCTCTTTCTGCGGAAAAGACCAAGATCAAGTAAAAAAACTTGT
AGCAGGAAGTGGTGTATATATTTGTAATGAGTGTATTGAATTATGCTCAGAAATCGTCGAAGAAGAATTAGCTCAAAACA
CTTCTGAAGCGATGACAGAATTACCTACTCCTAAAGAAATTATGGATCATTTAAACGAATATGTTATTGGTCAAGAAAAA
GCTAAAAAATCTTTAGCTGTAGCTGTTTATAACCACTATAAGCGTATTCAACAATTAGGACCAAAAGAAGATGATGTTGA
ATTACAAAAAAGTAACATTGCATTAATTGGGCCAACAGGTAGTGGTAAAACATTATTAGCTCAAACATTAGCCAAGACGT
TGAATGTACCATTTGCAATTGCAGATGCGACAAGTTTAACTGAAGCTGGTTATGTAGGCGATGATGTTGAAAATATCTTG
TTGAGATTAATTCAAGCAGCTGACTTTGACATTGATAAAGCCGAAAAAGGTATTATTTATGTAGATGAAATTGATAAAAT
TGCACGTAAATCTGAAAACACATCTATAACACGTGACGTTTCAGGTGAAGGTGTTCAACAAGCATTGCTTAAAATCTTAG
AAGGTACGACTGCAAGTGTTCCGCCACAAGGTGGACGCAAACATCCAAACCAAGAAATGATTCAAATTGATACAACAAAT
ATCTTATTTATTCTTGGTGGTGCCTTTGATGGTATTGAAGAAGTGATTAAGCGCCGTCTTGGTGAAAAAGTTATTGGTTT
CTCAAGCAATGAAGCTGATAAATATGACGAACAAGCATTATTAGCACAAATTCGCCCAGAAGATTTGCAAGCCTATGGTT
TGATTCCTGAATTTATCGGACGTGTGCCAATTGTAGCTAATTTAGAAACATTAGATGTAACTGCGTTGAAAAACATCTTA
ACGCAACCTAAAAATGCACTTGTGAAACAATATACTAAAATGCTGGAATTAGATGATGTGGATTTAGAGTTCACTGAAGA
AGCTTTATCAGCAATTAGTGAAAAAGCAATTGAAAGAAAAACAGGTGCGCGTGGTTTACGTTCAATCATAGAAGAATCGT
TAATCGATATTATGTTTGATGTGCCTTCTAACGAAAATGTAACGAAGGTAGTTATTACAGCACAAACAATTAATGAAGAA
ACTGAACCAGAACTATACGACGCAGAAGGCAATTTAATTAATAATAGTAAAACATCAGCTTAA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-305)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63789

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

66.917

95

0.636
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.456

94.048

0.531