Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   QAO32_RS09965 Genome accession   NZ_CP123070
Coordinates   1992053..1993165 (-) Length   370 a.a.
NCBI ID   WP_000775116.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SW-MSSA64     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1987053..1998165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO32_RS09955 (QAO32_09950) gyrA 1987409..1990072 (-) 2664 WP_000819075.1 DNA gyrase subunit A -
  QAO32_RS09960 (QAO32_09955) gyrB 1990109..1992043 (-) 1935 WP_000255583.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  QAO32_RS09965 (QAO32_09960) recF 1992053..1993165 (-) 1113 WP_000775116.1 DNA replication/repair protein RecF Machinery gene
  QAO32_RS09970 (QAO32_09965) yaaA 1993162..1993407 (-) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  QAO32_RS09975 (QAO32_09970) dnaN 1993789..1994922 (-) 1134 WP_000969811.1 DNA polymerase III subunit beta -
  QAO32_RS09980 (QAO32_09975) dnaA 1995200..1996561 (-) 1362 WP_001290430.1 chromosomal replication initiator protein DnaA -
  QAO32_RS09985 (QAO32_09980) rpmH 1997292..1997429 (+) 138 WP_000240855.1 50S ribosomal protein L34 -
  QAO32_RS09990 (QAO32_09985) rnpA 1997550..1997903 (+) 354 WP_001789343.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42445.46 Da        Isoelectric Point: 6.4362

>NTDB_id=745522 QAO32_RS09965 WP_000775116.1 1992053..1993165(-) (recF) [Staphylococcus aureus strain SW-MSSA64]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEATR
LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=745522 QAO32_RS09965 WP_000775116.1 1992053..1993165(-) (recF) [Staphylococcus aureus strain SW-MSSA64]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCGAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTGTCGCTGAATTATTTACCTAGTCTTAAATTTGATTATGCTCAAAATGAAGCGACACGA
CTTGAAGAAATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACAGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.649

100

0.586
  recF Streptococcus pneumoniae R6

49.33

100

0.497