Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   CFBP5506_RS12285 Genome accession   NZ_CP122962
Coordinates   2564239..2564844 (-) Length   201 a.a.
NCBI ID   WP_080791964.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain CFBP5506     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2559239..2569844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP5506_RS12270 (CFBP5506_12270) rimP 2560406..2561002 (-) 597 WP_080791970.1 ribosome maturation factor RimP -
  CFBP5506_RS12275 (CFBP5506_12275) - 2561289..2562917 (+) 1629 WP_004439071.1 MFS transporter -
  CFBP5506_RS12280 (CFBP5506_12280) - 2562938..2564203 (-) 1266 WP_080791967.1 lytic murein transglycosylase -
  CFBP5506_RS12285 (CFBP5506_12285) recR 2564239..2564844 (-) 606 WP_080791964.1 recombination mediator RecR Machinery gene
  CFBP5506_RS12290 (CFBP5506_12290) - 2564882..2565517 (+) 636 WP_162927470.1 MOSC domain-containing protein -
  CFBP5506_RS12295 (CFBP5506_12295) - 2565575..2565898 (-) 324 WP_003507179.1 YbaB/EbfC family nucleoid-associated protein -
  CFBP5506_RS12300 (CFBP5506_12300) - 2565923..2567797 (-) 1875 WP_080791961.1 DNA polymerase III subunit gamma/tau -
  CFBP5506_RS12310 (CFBP5506_12310) - 2568039..2568467 (+) 429 WP_162927469.1 HIT family protein -
  CFBP5506_RS12315 (CFBP5506_12315) nudC 2568467..2569429 (+) 963 WP_080791959.1 NAD(+) diphosphatase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21412.76 Da        Isoelectric Point: 6.6301

>NTDB_id=744706 CFBP5506_RS12285 WP_080791964.1 2564239..2564844(-) (recR) [Agrobacterium tumefaciens strain CFBP5506]
MAKRVTGPEIEKLIQLLAKVPGLGPRSARRAALHLIKKKEQLLGPLGHAMGEAYDKVKICSCCGNVDTINPCTVCADDRR
DQSVIIVVEDVSDLWALERTGAMNTAYHVLGGTLSPLDGVGPEDLNIKGLIDRVSAGGIRELIIAVNATVEGQATAHYIT
DRLSGLDIKITRLAHGVPVGGELDYLDEGTLTAALRARTTI

Nucleotide


Download         Length: 606 bp        

>NTDB_id=744706 CFBP5506_RS12285 WP_080791964.1 2564239..2564844(-) (recR) [Agrobacterium tumefaciens strain CFBP5506]
ATGGCAAAACGAGTCACCGGTCCCGAAATTGAAAAACTGATCCAGCTTCTGGCAAAAGTGCCGGGGCTCGGCCCCCGTTC
GGCGCGGCGTGCGGCGTTGCATCTCATCAAGAAGAAAGAGCAACTTCTCGGGCCGCTGGGTCATGCCATGGGCGAAGCCT
ATGACAAGGTGAAGATCTGCTCCTGCTGCGGCAATGTCGATACGATCAATCCCTGCACCGTTTGCGCCGACGACCGGCGT
GATCAGTCGGTCATCATCGTGGTGGAAGACGTGTCAGATCTCTGGGCGCTGGAACGGACGGGCGCGATGAACACCGCCTA
TCATGTGCTTGGCGGTACATTGTCGCCGCTTGATGGCGTCGGACCGGAAGACCTGAATATCAAGGGCCTGATCGACCGTG
TCAGCGCCGGCGGCATCCGCGAGCTCATCATCGCCGTCAATGCGACGGTGGAGGGGCAGGCAACCGCCCACTACATCACC
GACCGCCTTTCCGGTCTCGACATCAAGATCACCCGGCTTGCGCATGGCGTGCCGGTGGGCGGTGAGCTCGATTATCTCGA
TGAGGGCACATTGACGGCGGCGCTTCGGGCGCGCACGACGATCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(45-81)

Toprim domain (Toprim_4)

(83-174)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

46.392

96.517

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.792

95.522

0.428
  recR Streptococcus pneumoniae R6

38.021

95.522

0.363