Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   QBD03_RS08270 Genome accession   NZ_CP122959
Coordinates   1662014..1662688 (+) Length   224 a.a.
NCBI ID   WP_011375146.1    Uniprot ID   Q38VM7
Organism   Latilactobacillus sakei strain HUP1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1657014..1667688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD03_RS08250 (QBD03_08250) - 1657348..1658088 (-) 741 WP_035145739.1 MBL fold metallo-hydrolase -
  QBD03_RS08255 (QBD03_08255) - 1658218..1659003 (-) 786 WP_016265492.1 DUF975 family protein -
  QBD03_RS08260 (QBD03_08260) - 1659021..1661120 (-) 2100 WP_213923312.1 ABC transporter permease -
  QBD03_RS08265 (QBD03_08265) - 1661098..1661874 (-) 777 WP_011375145.1 ABC transporter ATP-binding protein -
  QBD03_RS08270 (QBD03_08270) braR 1662014..1662688 (+) 675 WP_011375146.1 response regulator transcription factor Regulator
  QBD03_RS08275 (QBD03_08275) - 1662698..1663765 (+) 1068 WP_182159936.1 HAMP domain-containing histidine kinase -
  QBD03_RS08280 (QBD03_08280) - 1663875..1665041 (+) 1167 WP_280102701.1 hypothetical protein -
  QBD03_RS08285 (QBD03_08285) - 1665075..1666370 (-) 1296 WP_016265497.1 PTS sugar transporter subunit IIC -
  QBD03_RS08290 (QBD03_08290) nrdG 1666617..1667198 (-) 582 WP_280102702.1 anaerobic ribonucleoside-triphosphate reductase activating protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25960.96 Da        Isoelectric Point: 4.7301

>NTDB_id=744661 QBD03_RS08270 WP_011375146.1 1662014..1662688(+) (braR) [Latilactobacillus sakei strain HUP1]
MFEIMIVEDDPTIANLIAENLEKWQLKAIIPDDFDTIFDRFLTDKPHLVLLDINLPVYDGFYWCRKIREVSKVPIIFISS
RSTNMDMVMSMNMGGDDFVNKPFSMEVLIAKINALLRRTYNYVDQNTDVIEHNGLLINLQSGGAQVGDTVVDLSKNEYKL
LQFLMRQHGQIVSREKLLRALWDDERFVDDNTLTVNINRLRKKIEQAGLEDYIQTKIGQGYIIP

Nucleotide


Download         Length: 675 bp        

>NTDB_id=744661 QBD03_RS08270 WP_011375146.1 1662014..1662688(+) (braR) [Latilactobacillus sakei strain HUP1]
ATGTTTGAAATTATGATTGTTGAAGATGATCCTACAATTGCTAACTTGATTGCTGAAAACTTAGAGAAATGGCAGTTAAA
AGCCATTATCCCCGATGATTTCGATACCATTTTTGACCGTTTTTTAACGGATAAACCCCACTTAGTCCTACTAGATATCA
ATTTACCCGTCTATGACGGTTTCTATTGGTGTCGTAAAATTCGTGAAGTTTCTAAAGTGCCGATTATCTTCATCTCTAGC
CGCAGTACTAATATGGATATGGTGATGTCAATGAACATGGGTGGCGATGATTTTGTTAACAAGCCCTTTTCAATGGAAGT
CTTAATCGCTAAAATCAATGCGCTTTTACGCCGGACCTATAACTATGTCGATCAAAATACAGACGTCATCGAACATAACG
GCCTTCTAATTAACTTACAAAGTGGTGGGGCTCAAGTTGGTGATACTGTCGTTGACCTCTCTAAAAATGAATATAAGTTA
CTCCAATTTTTGATGCGCCAACACGGTCAAATTGTCAGTCGTGAAAAACTCCTACGGGCGTTATGGGACGACGAACGTTT
TGTCGATGACAATACATTAACCGTCAATATCAATCGGCTGCGTAAAAAAATCGAACAAGCCGGTCTAGAAGACTATATTC
AAACTAAAATCGGCCAAGGCTACATCATCCCATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38VM7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

46.575

97.768

0.455
  vicR Streptococcus mutans UA159

34.914

100

0.362