Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   QBD03_RS03940 Genome accession   NZ_CP122959
Coordinates   809291..811339 (+) Length   682 a.a.
NCBI ID   WP_099960429.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain HUP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 804291..816339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD03_RS03915 (QBD03_03915) rpe 804616..805278 (+) 663 WP_076647402.1 ribulose-phosphate 3-epimerase -
  QBD03_RS03920 (QBD03_03920) - 805265..805915 (+) 651 WP_016264867.1 thiamine diphosphokinase -
  QBD03_RS03925 (QBD03_03925) rpmB 806265..806450 (-) 186 WP_004265581.1 50S ribosomal protein L28 -
  QBD03_RS03930 (QBD03_03930) - 806753..807115 (+) 363 WP_016264868.1 Asp23/Gls24 family envelope stress response protein -
  QBD03_RS03935 (QBD03_03935) - 807179..808849 (+) 1671 WP_085391690.1 DAK2 domain-containing protein -
  QBD03_RS03940 (QBD03_03940) recG/mmsA 809291..811339 (+) 2049 WP_099960429.1 ATP-dependent DNA helicase RecG Machinery gene
  QBD03_RS03945 (QBD03_03945) plsX 811359..812372 (+) 1014 WP_016264871.1 phosphate acyltransferase PlsX -
  QBD03_RS03950 (QBD03_03950) acpP 812519..812761 (+) 243 WP_011374409.1 acyl carrier protein -
  QBD03_RS03955 (QBD03_03955) - 813233..814879 (+) 1647 WP_141265912.1 peptide ABC transporter substrate-binding protein -
  QBD03_RS03960 (QBD03_03960) opp3b 814949..815884 (+) 936 WP_011374411.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 76012.50 Da        Isoelectric Point: 7.1154

>NTDB_id=744622 QBD03_RS03940 WP_099960429.1 809291..811339(+) (recG/mmsA) [Latilactobacillus sakei strain HUP1]
MSVLSLTDSVTVLTGVGPKRLTALNQLGIATISDLLYYFPFRYEDLKVKDLSEAVDQEKVTLKGTVVADPVVSRWGPGKT
RLNVRLLINHDVIMVTFFNQPYLKDKFEAGVDIAVYGKWDARRNSLTGMKVLAVQSADNPSFAAIYSTNKNVRQGTLVKL
IREAFDNYRNVIPDLIPADIRERYKLVSEVELIAGMHFPESYPEAKQARRTAIFHEFFLYQLQLQAIKQADRHVENGLAL
PYQNAALKEFIKTLPFDLTDAQKRVVNEICLDLKAPAHMNRLLQGDVGSGKTIVAAIAMFAAVTAGFQAALMVPTEILAE
QHYQSLQKLYAPMNVTVGLLTGSTTAKERRTLLADIESGRINIIVGTHALIQDAVVYHKLGFAVIDEQHRFGVNQRRVLR
EKGLQPDMLAMTATPIPRTLAITAYGEMDVSTIDELPKGRIPIETSWVRSNQVEQALSFVQKQLADNSQVFAITPLIAES
EQMDLKNAEEIYATLADRFEPQYHVALLHGKLKDDEKNRIMTAFSNNEIQLLVSTTVVEVGVDVPNATVMMIFDADRFGL
AQLHQLRGRVGRGKKKAYCLLIADPKNQQGVDRMTIMTETTNGFVVAQKDLELRGPGEVFGDRQSGLPVFKVGDPVADFA
SLQVAQQEVQKIFTVDPTFSQPAYAPLKAYLAQQKQNYQTLD

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=744622 QBD03_RS03940 WP_099960429.1 809291..811339(+) (recG/mmsA) [Latilactobacillus sakei strain HUP1]
CTGTCAGTGTTAAGTTTAACGGATTCTGTGACTGTTTTAACGGGTGTTGGCCCGAAGCGTTTGACAGCCCTCAATCAATT
AGGAATCGCAACAATCAGTGATCTATTGTATTATTTTCCGTTTCGTTACGAGGATTTAAAGGTTAAGGATCTCTCAGAAG
CGGTCGATCAGGAAAAGGTCACCTTAAAAGGAACCGTTGTCGCTGATCCAGTCGTCAGTCGTTGGGGACCGGGTAAGACA
CGGCTAAACGTCCGGTTATTGATTAATCATGATGTCATTATGGTGACTTTTTTCAATCAACCCTACTTGAAGGATAAATT
TGAAGCAGGCGTTGATATTGCTGTTTATGGTAAATGGGATGCTAGACGGAATAGTTTAACCGGGATGAAGGTTTTAGCGG
TTCAATCGGCTGATAATCCTTCGTTCGCGGCGATTTATTCAACCAATAAAAACGTGCGTCAAGGCACACTCGTAAAATTG
ATTCGCGAAGCGTTTGATAATTATCGCAATGTCATTCCGGATTTGATTCCGGCCGATATTCGCGAGCGGTATAAGTTAGT
TTCTGAAGTGGAACTGATTGCTGGAATGCATTTTCCGGAAAGCTACCCAGAAGCCAAGCAGGCGCGACGCACCGCCATTT
TTCATGAATTCTTCTTGTACCAACTGCAATTGCAGGCGATTAAACAAGCAGACCGCCATGTTGAAAATGGCTTAGCACTG
CCTTATCAAAACGCAGCCCTCAAGGAATTTATTAAGACATTACCGTTTGATTTAACGGATGCTCAAAAGCGGGTGGTCAA
CGAAATTTGTTTAGACCTTAAGGCACCGGCACATATGAACCGTCTTTTACAAGGGGATGTTGGGTCTGGGAAGACGATTG
TCGCGGCGATTGCGATGTTTGCTGCGGTGACGGCCGGTTTCCAAGCGGCCTTAATGGTGCCCACCGAAATTTTGGCGGAA
CAACATTATCAGAGCCTACAAAAGCTTTATGCACCAATGAATGTGACGGTTGGGTTACTAACTGGTTCGACAACCGCCAA
GGAGCGCCGGACGTTGTTGGCGGATATTGAATCCGGTCGGATCAATATCATTGTCGGAACGCACGCACTTATTCAAGATG
CCGTGGTTTACCACAAGTTAGGCTTTGCCGTCATCGATGAACAACATCGATTTGGGGTCAATCAACGGCGCGTGCTACGT
GAAAAAGGCTTGCAGCCTGATATGCTGGCAATGACAGCGACACCGATTCCGCGGACCTTGGCAATTACCGCCTATGGCGA
AATGGATGTTTCGACCATCGATGAGTTACCTAAAGGTCGGATTCCAATTGAAACCAGTTGGGTGCGTAGTAACCAGGTTG
AACAAGCGCTCTCGTTTGTTCAAAAACAATTGGCTGACAACTCGCAAGTTTTTGCGATTACGCCGTTAATTGCGGAGTCG
GAACAAATGGATCTCAAAAATGCGGAAGAAATCTACGCGACTTTGGCGGATCGGTTTGAGCCGCAGTACCATGTGGCGCT
ATTACACGGTAAGTTGAAGGATGACGAGAAAAACCGGATTATGACGGCTTTTTCAAATAACGAGATTCAACTACTGGTTT
CAACGACCGTCGTTGAAGTCGGGGTCGATGTGCCTAATGCGACCGTGATGATGATTTTCGATGCTGACCGGTTTGGCTTA
GCCCAACTTCATCAATTGCGTGGCCGGGTTGGTCGGGGCAAGAAAAAGGCCTACTGTCTATTGATTGCCGATCCTAAGAA
TCAACAAGGTGTAGATCGAATGACGATCATGACCGAAACGACCAACGGTTTTGTTGTTGCGCAAAAAGATTTGGAATTAC
GAGGCCCTGGTGAGGTCTTTGGCGATCGGCAATCGGGATTACCAGTCTTCAAGGTTGGTGATCCAGTCGCTGATTTTGCC
AGCTTACAGGTCGCACAACAAGAAGTACAAAAAATCTTCACGGTTGATCCTACTTTTAGCCAACCGGCGTACGCGCCTTT
AAAAGCGTATCTCGCACAACAAAAACAAAACTATCAAACATTAGATTAA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(600-673)

RecG wedge domain (RecG_wedge)

(14-164)

DEAD/DEAH box helicase (DEAD)

(259-416)

Helicase conserved C-terminal domain (Helicase_C)

(465-573)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

51.335

98.827

0.507
  recG/mmsA Streptococcus pneumoniae R36A

51.335

98.827

0.507
  recG Bacillus subtilis subsp. subtilis str. 168

49.321

97.214

0.479