Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QBD03_RS02870 Genome accession   NZ_CP122959
Coordinates   600503..601840 (+) Length   445 a.a.
NCBI ID   WP_280103148.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain HUP1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 595503..606840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD03_RS02855 (QBD03_02855) rny 596940..598505 (+) 1566 WP_011374197.1 ribonuclease Y -
  QBD03_RS02860 (QBD03_02860) - 598661..599749 (+) 1089 WP_035144637.1 MraY family glycosyltransferase -
  QBD03_RS02865 (QBD03_02865) - 599776..600441 (-) 666 WP_025016329.1 YigZ family protein -
  QBD03_RS02870 (QBD03_02870) comFA 600503..601840 (+) 1338 WP_280103148.1 DEAD/DEAH box helicase Machinery gene
  QBD03_RS02875 (QBD03_02875) comFC 602083..602511 (+) 429 WP_280103149.1 ComF family protein Machinery gene
  QBD03_RS02880 (QBD03_02880) raiA 602638..603183 (+) 546 WP_011374202.1 ribosome-associated translation inhibitor RaiA -
  QBD03_RS02885 (QBD03_02885) secA 603432..605795 (+) 2364 WP_011374203.1 preprotein translocase subunit SecA -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 50288.66 Da        Isoelectric Point: 9.6970

>NTDB_id=744611 QBD03_RS02870 WP_280103148.1 600503..601840(+) (comFA) [Latilactobacillus sakei strain HUP1]
MGQQVIACGRQFTAAQLADTQNNNYSLPQIKRRPAFLRVKHRLVCQRCQQVVPPQTCLPDGRHYCAQCLLFGRLVEGDWL
YTVPECHLFENNIPKLTWEGQLTPHQEQAAQAVVEVVQTQKRHVLTAVTGAGKTEMLFQGILVALQKGQRVCLAAPRVAV
CLELYPRLQAAFATTSIMLMHGEQTEPYRYTQLVICTTHQLLKFYHAFDTVIVDEVDAFPFVDNPVLATAVEQACKPQCA
LLYLTATPTPAIKRAIAAKQMTVSELPLRFHGHLLPEPQRHVAFNWRAQLKKGRLPKRLERDCQTCLKAQQILLFVPQVR
LLQPVANQLSTLLPAVRIETLHANDPDQIKKITAFRAQQIQLMVTTTILERGVTFKNVAVLVLGAEHMVFNEAVLVQIAG
RAGRHKDYAQNPVHFYYQDYTRAIKGACRQIKAQNQRGRRLQSTV

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=744611 QBD03_RS02870 WP_280103148.1 600503..601840(+) (comFA) [Latilactobacillus sakei strain HUP1]
ATGGGACAACAAGTAATTGCCTGTGGTCGCCAGTTTACGGCGGCCCAGTTAGCCGATACGCAAAATAATAACTATAGTTT
ACCACAGATTAAGCGGCGACCTGCGTTTTTACGGGTCAAGCACCGCTTAGTCTGCCAACGTTGTCAGCAAGTGGTGCCCC
CGCAAACCTGCTTACCAGACGGTCGCCATTATTGCGCGCAATGTTTGTTATTTGGTCGTTTGGTAGAGGGCGATTGGTTA
TACACGGTACCGGAGTGTCATTTATTCGAAAATAACATACCAAAATTGACGTGGGAGGGGCAATTAACACCGCATCAGGA
ACAAGCTGCCCAAGCGGTGGTTGAGGTGGTTCAAACACAAAAACGGCACGTATTAACGGCCGTGACCGGTGCAGGGAAGA
CTGAGATGCTTTTTCAAGGAATTTTAGTTGCGCTTCAAAAGGGTCAGCGGGTATGTCTGGCAGCGCCTAGAGTCGCCGTT
TGCTTGGAACTTTATCCGCGCCTACAAGCCGCCTTTGCAACGACTAGTATCATGTTGATGCACGGTGAGCAAACTGAGCC
CTATCGCTATACGCAGTTAGTGATTTGCACGACGCATCAGTTGCTAAAGTTTTATCACGCTTTTGACACGGTAATCGTTG
ATGAAGTCGATGCTTTTCCTTTTGTTGATAATCCCGTTTTAGCCACGGCAGTTGAACAAGCCTGCAAGCCTCAGTGCGCT
TTATTATATTTAACGGCGACCCCGACCCCCGCCATCAAACGCGCGATTGCTGCTAAACAAATGACGGTTAGCGAATTACC
GCTCCGCTTTCATGGTCATCTATTACCAGAACCACAGCGGCACGTCGCTTTTAATTGGCGGGCCCAATTAAAAAAAGGCC
GGTTACCTAAACGGCTTGAACGGGATTGCCAGACTTGCTTAAAAGCGCAACAGATTTTGTTATTCGTGCCGCAAGTGCGG
TTATTGCAACCAGTTGCCAATCAGTTATCAACCTTATTGCCGGCGGTCAGGATTGAAACATTGCATGCTAACGATCCAGA
TCAAATCAAAAAGATTACGGCGTTTAGAGCACAACAAATTCAGCTAATGGTGACGACCACCATTTTAGAACGGGGCGTTA
CGTTTAAAAACGTTGCAGTTTTGGTCTTAGGCGCGGAACACATGGTGTTTAACGAAGCCGTTTTGGTCCAGATTGCCGGG
CGAGCGGGACGGCATAAAGATTACGCCCAAAATCCGGTTCATTTTTATTATCAAGACTATACGCGGGCGATTAAAGGCGC
TTGTCGGCAAATTAAGGCCCAAAATCAGAGGGGACGGCGATTACAATCAACTGTTTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(307-405)

Type III restriction enzyme, res subunit (ResIII)

(101-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Latilactobacillus sakei subsp. sakei 23K

98.876

100

0.989
  comFA/cflA Streptococcus pneumoniae TIGR4

38.979

96.854

0.378
  comFA/cflA Streptococcus pneumoniae R6

38.747

96.854

0.375
  comFA/cflA Streptococcus pneumoniae D39

38.747

96.854

0.375
  comFA/cflA Streptococcus pneumoniae Rx1

38.747

96.854

0.375
  comFA/cflA Streptococcus mitis SK321

37.963

97.079

0.369
  comFA/cflA Streptococcus mitis NCTC 12261

38.051

96.854

0.369