Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   QBD03_RS00365 Genome accession   NZ_CP122959
Coordinates   70422..71228 (+) Length   268 a.a.
NCBI ID   WP_280102906.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain HUP1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 65422..76228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD03_RS00345 (QBD03_00345) yycF 65619..66332 (+) 714 WP_011373790.1 response regulator YycF -
  QBD03_RS00350 (QBD03_00350) walK 66342..68240 (+) 1899 WP_280102905.1 cell wall metabolism sensor histidine kinase WalK -
  QBD03_RS00355 (QBD03_00355) yycH 68230..69561 (+) 1332 WP_011373792.1 two-component system activity regulator YycH -
  QBD03_RS00360 (QBD03_00360) - 69566..70387 (+) 822 WP_112206805.1 two-component system regulatory protein YycI -
  QBD03_RS00365 (QBD03_00365) vicX 70422..71228 (+) 807 WP_280102906.1 MBL fold metallo-hydrolase Regulator
  QBD03_RS00370 (QBD03_00370) htrA 71362..72621 (+) 1260 WP_280102907.1 trypsin-like peptidase domain-containing protein Regulator
  QBD03_RS00375 (QBD03_00375) rlmH 73166..73645 (+) 480 WP_011373797.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  QBD03_RS00380 (QBD03_00380) - 73835..74119 (+) 285 WP_280102908.1 Mor transcription activator family protein -
  QBD03_RS00385 (QBD03_00385) - 74148..74882 (+) 735 WP_280102909.1 zinc ribbon domain-containing protein -
  QBD03_RS00390 (QBD03_00390) - 74963..75433 (+) 471 WP_280102910.1 hypothetical protein -
  QBD03_RS00395 (QBD03_00395) - 75514..75783 (+) 270 WP_280102911.1 hypothetical protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 29694.32 Da        Isoelectric Point: 5.1315

>NTDB_id=744592 QBD03_RS00365 WP_280102906.1 70422..71228(+) (vicX) [Latilactobacillus sakei strain HUP1]
MVEKDEMRVSVLASSSSGNTTFIETPTQKILVDAGMSGKRVQDLMHSIGRDLKDVNSLLVTHEHRDHSSGVGVLARRYGI
DVYANQPTWDAMASIIGTVPDEHKHVFEMGKTKTLGDIDVESYGVSHDAAAAQFYQFHHNNRAFAILTDTGYVSDQIRGT
IENADAYLVECNHDLEMLRMGKYPWSLKQRILSDTGHLSNEDGASALMAFMGQQTKRVFLGHLSQENNMKELAHLTVASI
LEQHDYGVGTDFEILDTDPAIADPLFVV

Nucleotide


Download         Length: 807 bp        

>NTDB_id=744592 QBD03_RS00365 WP_280102906.1 70422..71228(+) (vicX) [Latilactobacillus sakei strain HUP1]
ATGGTAGAAAAAGATGAAATGCGGGTTAGCGTCTTAGCCAGCAGTAGTTCAGGCAACACAACTTTTATTGAAACACCAAC
TCAAAAAATATTAGTCGACGCGGGAATGAGCGGTAAACGCGTTCAGGATTTAATGCACAGTATAGGTCGGGATTTAAAGG
ATGTTAACAGTCTACTAGTGACGCACGAACATCGCGATCACAGTAGTGGCGTGGGTGTTTTAGCCCGCCGGTATGGGATT
GATGTGTATGCTAACCAACCGACTTGGGATGCGATGGCGTCAATTATTGGGACCGTTCCTGATGAACATAAACACGTCTT
TGAGATGGGTAAAACCAAAACACTCGGTGATATCGATGTTGAAAGTTATGGCGTTTCACACGATGCCGCTGCGGCGCAAT
TCTATCAATTTCATCATAACAACCGGGCCTTCGCAATCTTAACGGATACGGGTTACGTTTCGGATCAAATCAGAGGCACT
ATCGAAAATGCAGATGCCTACTTGGTGGAATGTAATCACGATTTGGAAATGTTACGAATGGGTAAGTATCCTTGGTCGCT
TAAACAACGTATTCTTAGTGATACGGGTCATCTATCTAACGAAGATGGGGCTTCAGCCTTAATGGCCTTTATGGGACAAC
AAACAAAGCGTGTTTTCCTAGGTCATTTGAGCCAAGAAAACAATATGAAGGAGTTGGCACACTTAACGGTGGCGTCAATT
TTAGAACAACATGATTACGGTGTTGGCACGGATTTTGAAATTTTGGATACTGATCCAGCGATTGCGGACCCTTTATTTGT
TGTTTAG

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(17-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

59.073

96.642

0.571