Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   FYK59_RS11010 Genome accession   NZ_AP019853
Coordinates   2106242..2106559 (-) Length   105 a.a.
NCBI ID   WP_003697861.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SS3160     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2101242..2111559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYK59_RS10970 (NGSS3160_21120) - 2102638..2103023 (-) 386 Protein_2132 pilin -
  FYK59_RS12335 (NGSS3160_21130) - 2103155..2103640 (-) 486 WP_125121586.1 pilin -
  FYK59_RS10985 - 2103697..2104044 (-) 348 Protein_2134 pilin -
  FYK59_RS10990 - 2104097..2104493 (-) 397 Protein_2135 pilin -
  FYK59_RS10995 (NGSS3160_21150) - 2104625..2105064 (-) 440 Protein_2136 pilin -
  FYK59_RS12510 (NGSS3160_21160) - 2105590..2106318 (-) 729 WP_353114220.1 pilin -
  FYK59_RS11010 (NGSS3160_21170) pilE 2106242..2106559 (-) 318 WP_003697861.1 pilin Machinery gene
  FYK59_RS11015 - 2106889..2107080 (+) 192 WP_014580443.1 hypothetical protein -
  FYK59_RS11020 (NGSS3160_21180) - 2107144..2107833 (-) 690 WP_003696506.1 SprT family zinc-dependent metalloprotease -
  FYK59_RS11025 (NGSS3160_21190) - 2107830..2108573 (-) 744 WP_003687014.1 lysophospholipid acyltransferase family protein -
  FYK59_RS11030 (NGSS3160_21200) gmhB 2108603..2109166 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  FYK59_RS11035 (NGSS3160_21220) - 2109309..2110960 (+) 1652 Protein_2143 LTA synthase family protein -
  FYK59_RS12345 (NGSS3160_21230) - 2111027..2111485 (-) 459 Protein_2144 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11639.16 Da        Isoelectric Point: 10.3830

>NTDB_id=74459 FYK59_RS11010 WP_003697861.1 2106242..2106559(-) (pilE) [Neisseria gonorrhoeae strain SS3160]
MASTGVNKEIKGKKLSLWAKRQDGSVKWFCGQPVKRESNNADAVTADGTDGANGTKIETKHLPSTCRDESSAGCIETPRA
DFKHFQKISRYRILPESRQMAGKQR

Nucleotide


Download         Length: 318 bp        

>NTDB_id=74459 FYK59_RS11010 WP_003697861.1 2106242..2106559(-) (pilE) [Neisseria gonorrhoeae strain SS3160]
ATGGCTTCAACCGGCGTAAACAAAGAAATCAAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAA
ATGGTTCTGCGGACAGCCGGTTAAGCGCGAAAGCAACAACGCCGACGCCGTCACCGCCGACGGCACCGACGGCGCCAACG
GCACCAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCTGCCGGTTGCATAGAAACACCACGCGCC
GATTTCAAACACTTCCAAAAAATCAGCCGTTACCGAATATTACCTGAATCACGGCAAATGGCCGGAAAACAACGGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

73.611

68.571

0.505
  pilE Neisseria gonorrhoeae MS11

60.563

67.619

0.41

Multiple sequence alignment